Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 AC010332.2-201ENST00000613083 1904 ntBASIC3.38□□□□□ -1.87
YBX1P67809 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.38□□□□□ -1.87
YBX1P67809 AC007496.3-201ENST00000624987 3443 ntBASIC3.38□□□□□ -1.87
YBX1P67809 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.38□□□□□ -1.87
YBX1P67809 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
YBX1P67809 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 CEP170P1-201ENST00000502249 4587 ntBASIC3.38□□□□□ -1.87
YBX1P67809 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
YBX1P67809 Y_RNA.415-201ENST00000384012 112 ntBASIC3.38□□□□□ -1.87
YBX1P67809 SNORD20-201ENST00000384550 80 ntBASIC3.38□□□□□ -1.87
YBX1P67809 SNORA40-201ENST00000388090 126 ntBASIC3.38□□□□□ -1.87
YBX1P67809 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
YBX1P67809 RNU6-381P-201ENST00000391259 108 ntBASIC3.38□□□□□ -1.87
YBX1P67809 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.38□□□□□ -1.87
YBX1P67809 EBAG9P1-201ENST00000418955 543 ntBASIC3.38□□□□□ -1.87
YBX1P67809 AC005300.1-201ENST00000428401 373 ntBASIC3.38□□□□□ -1.87
YBX1P67809 RPS4XP2-201ENST00000458402 793 ntBASIC3.38□□□□□ -1.87
YBX1P67809 RPL23AP62-201ENST00000463396 453 ntBASIC3.38□□□□□ -1.87
YBX1P67809 RPL30P14-201ENST00000482744 348 ntBASIC3.38□□□□□ -1.87
YBX1P67809 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.38□□□□□ -1.87
YBX1P67809 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.38□□□□□ -1.87
YBX1P67809 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.38□□□□□ -1.87
YBX1P67809 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.38□□□□□ -1.87
YBX1P67809 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.38□□□□□ -1.87
YBX1P67809 MIR4474-201ENST00000579189 78 ntBASIC3.38□□□□□ -1.87
YBX1P67809 MIR3923-201ENST00000579521 83 ntBASIC3.38□□□□□ -1.87
YBX1P67809 MIR3136-201ENST00000583498 78 ntBASIC3.38□□□□□ -1.87
YBX1P67809 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.38□□□□□ -1.87
YBX1P67809 MIR7975-201ENST00000619350 68 ntBASIC3.38□□□□□ -1.87
YBX1P67809 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.38□□□□□ -1.87
YBX1P67809 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
YBX1P67809 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
YBX1P67809 AC002543.1-201ENST00000299783 1954 ntBASIC3.38□□□□□ -1.87
YBX1P67809 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.38□□□□□ -1.87
YBX1P67809 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
YBX1P67809 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
YBX1P67809 RNU4-35P-201ENST00000362588 141 ntBASIC3.37□□□□□ -1.87
YBX1P67809 RNU6-270P-201ENST00000364131 105 ntBASIC3.37□□□□□ -1.87
YBX1P67809 Y_RNA.261-201ENST00000364631 102 ntBASIC3.37□□□□□ -1.87
YBX1P67809 Y_RNA.500-201ENST00000384466 111 ntBASIC3.37□□□□□ -1.87
YBX1P67809 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
YBX1P67809 SNORD17-201ENST00000390930 237 ntBASIC3.37□□□□□ -1.87
YBX1P67809 SNORD105B-201ENST00000458770 79 ntBASIC3.37□□□□□ -1.87
YBX1P67809 SNORA25.12-201ENST00000516202 82 ntBASIC3.37□□□□□ -1.87
YBX1P67809 RNU2-12P-201ENST00000517216 168 ntBASIC3.37□□□□□ -1.87
YBX1P67809 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.37□□□□□ -1.87
YBX1P67809 DEFB131C-201ENST00000528817 165 ntBASIC3.37□□□□□ -1.87
YBX1P67809 AC021269.2-201ENST00000532318 330 ntBASIC3.37□□□□□ -1.87
YBX1P67809 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.37□□□□□ -1.87
YBX1P67809 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.37□□□□□ -1.87
YBX1P67809 AC105137.2-201ENST00000569073 466 ntBASIC3.37□□□□□ -1.87
YBX1P67809 MIR4744-201ENST00000581563 82 ntBASIC3.37□□□□□ -1.87
YBX1P67809 AC090616.3-201ENST00000582184 217 ntBASIC3.37□□□□□ -1.87
YBX1P67809 AC069294.1-201ENST00000608397 350 ntBASIC3.37□□□□□ -1.87
YBX1P67809 AC073308.1-201ENST00000623696 305 ntBASIC3.37□□□□□ -1.87
YBX1P67809 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.37□□□□□ -1.87
YBX1P67809 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
YBX1P67809 AC058791.1-201ENST00000608412 3198 ntBASIC3.37□□□□□ -1.87
YBX1P67809 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
YBX1P67809 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.37□□□□□ -1.87
YBX1P67809 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.37□□□□□ -1.87
YBX1P67809 AC007256.1-201ENST00000392253 2765 ntBASIC3.37□□□□□ -1.87
YBX1P67809 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
YBX1P67809 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
YBX1P67809 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
YBX1P67809 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
YBX1P67809 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
YBX1P67809 RNU6-801P-201ENST00000364087 105 ntBASIC3.36□□□□□ -1.87
YBX1P67809 RNU6-454P-201ENST00000364292 107 ntBASIC3.36□□□□□ -1.87
YBX1P67809 Y_RNA.293-201ENST00000364908 93 ntBASIC3.36□□□□□ -1.87
YBX1P67809 RNU4-11P-201ENST00000365287 132 ntBASIC3.36□□□□□ -1.87
YBX1P67809 RNU6-1264P-201ENST00000383891 107 ntBASIC3.36□□□□□ -1.87
YBX1P67809 CBX3P9-201ENST00000402326 552 ntBASIC3.36□□□□□ -1.87
YBX1P67809 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.36□□□□□ -1.87
YBX1P67809 AL161651.1-201ENST00000440882 223 ntBASIC3.36□□□□□ -1.87
YBX1P67809 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.36□□□□□ -1.87
YBX1P67809 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.36□□□□□ -1.87
YBX1P67809 RBMY2UP-201ENST00000453474 324 ntBASIC3.36□□□□□ -1.87
YBX1P67809 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.36□□□□□ -1.87
YBX1P67809 RN7SL293P-201ENST00000481765 281 ntBASIC3.36□□□□□ -1.87
YBX1P67809 RNU5F-2P-201ENST00000516066 82 ntBASIC3.36□□□□□ -1.87
YBX1P67809 RN7SKP164-201ENST00000516138 266 ntBASIC3.36□□□□□ -1.87
YBX1P67809 AC136628.3-201ENST00000521868 290 ntBASIC3.36□□□□□ -1.87
YBX1P67809 AC022616.8-201ENST00000533569 253 ntBASIC3.36□□□□□ -1.87
YBX1P67809 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.36□□□□□ -1.87
YBX1P67809 MIR4431-201ENST00000579990 94 ntBASIC3.36□□□□□ -1.87
YBX1P67809 MIR3609-201ENST00000582661 80 ntBASIC3.36□□□□□ -1.87
YBX1P67809 AC110741.2-201ENST00000605278 268 ntBASIC3.36□□□□□ -1.87
YBX1P67809 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.36□□□□□ -1.87
YBX1P67809 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
YBX1P67809 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
YBX1P67809 AC004944.1-201ENST00000517807 3059 ntBASIC3.36□□□□□ -1.87
YBX1P67809 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
YBX1P67809 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.36□□□□□ -1.87
YBX1P67809 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms