Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RN7SKP200-201ENST00000410564 320 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 MTATP6P20-201ENST00000414147 562 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.17□□□□□ -2.38
FOXA3P55318 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.17□□□□□ -2.38
FOXA3P55318 MTND1P20-201ENST00000430341 950 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AC005002.2-201ENST00000438228 269 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.17□□□□□ -2.38
FOXA3P55318 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AC112206.4-201ENST00000515142 405 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 RNU6-496P-201ENST00000516145 99 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 RNU2-34P-201ENST00000516534 121 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
FOXA3P55318 MTND4LP18-201ENST00000526864 291 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
FOXA3P55318 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.17□□□□□ -2.38
FOXA3P55318 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.17□□□□□ -2.38
FOXA3P55318 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.17□□□□□ -2.38
FOXA3P55318 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.17□□□□□ -2.38
FOXA3P55318 MIR3124-201ENST00000582636 67 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AC112187.2-201ENST00000604345 283 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.17□□□□□ -2.38
FOXA3P55318 AL360219.1-201ENST00000610230 366 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 AC243829.6-201ENST00000612652 106 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 MIR8054-201ENST00000620877 86 ntBASIC0.17□□□□□ -2.38
FOXA3P55318 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.17□□□□□ -2.38
FOXA3P55318 AC090625.1-201ENST00000357130 210 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RNU6-562P-201ENST00000362731 107 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 SNORD116-13-201ENST00000384408 92 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 Y_RNA.576-201ENST00000384781 102 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 SNORA12.1-201ENST00000390873 148 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RNU6-440P-201ENST00000390882 105 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 SNORD89-201ENST00000390981 114 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RNU1-119P-201ENST00000391122 165 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
FOXA3P55318 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 ELOCP4-201ENST00000420090 333 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AC012306.1-201ENST00000423267 114 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.16□□□□□ -2.38
FOXA3P55318 AC137499.1-201ENST00000427602 88 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.16□□□□□ -2.38
FOXA3P55318 SNAP23P1-201ENST00000433229 246 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RPL37P21-201ENST00000435890 276 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RPS24P1-201ENST00000438550 371 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.16□□□□□ -2.38
FOXA3P55318 NFU1P2-201ENST00000448700 469 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AL049830.1-201ENST00000468034 425 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.16□□□□□ -2.38
FOXA3P55318 AC079382.1-201ENST00000493346 557 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 HSPE1P23-201ENST00000509838 286 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.16□□□□□ -2.38
FOXA3P55318 SNORA70.12-201ENST00000516084 153 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RNU6-1146P-201ENST00000516282 102 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 RNU1-142P-201ENST00000516682 145 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AC023050.3-201ENST00000541142 333 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AC103996.1-201ENST00000555468 102 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 AC025627.3-201ENST00000582078 182 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.16□□□□□ -2.38
FOXA3P55318 AC093913.1-201ENST00000614178 329 ntBASIC0.16□□□□□ -2.38
FOXA3P55318 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.15□□□□□ -2.39
FOXA3P55318 Y_RNA.22-201ENST00000362492 102 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU1-133P-201ENST00000364867 167 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU4-48P-201ENST00000365559 182 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU6-975P-201ENST00000384296 105 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNA5SP247-201ENST00000411181 105 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA3P55318 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA3P55318 MED13P1-201ENST00000428342 171 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC245047.3-201ENST00000429428 127 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.15□□□□□ -2.39
FOXA3P55318 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA3P55318 AL031274.1-201ENST00000450334 232 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RPL39P39-201ENST00000455840 151 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 snoU13.6-201ENST00000458785 104 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC008628.2-201ENST00000502605 298 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC016550.1-201ENST00000505348 785 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC010486.2-201ENST00000505572 483 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC022493.2-201ENST00000506122 481 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA3P55318 RNU6-1178P-201ENST00000516674 107 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU6-567P-201ENST00000516746 107 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU6-685P-201ENST00000517088 95 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU6-1223P-201ENST00000517124 104 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC027419.1-201ENST00000522976 328 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC024995.1-201ENST00000523014 93 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.15□□□□□ -2.39
FOXA3P55318 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA3P55318 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA3P55318 MIR4711-201ENST00000578274 70 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 MIR5006-201ENST00000583027 110 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC146944.4-201ENST00000602697 718 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AL356157.2-201ENST00000605122 111 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AL121992.2-201ENST00000606262 256 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC064807.4-201ENST00000607201 407 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AC005520.5-201ENST00000613926 164 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 7SK.10-201ENST00000621414 298 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.15□□□□□ -2.39
FOXA3P55318 U6.108-201ENST00000637764 58 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 AL445984.1-201ENST00000637834 659 ntBASIC0.15□□□□□ -2.39
FOXA3P55318 RNU6-199P-201ENST00000362954 107 ntBASIC0.14□□□□□ -2.39
FOXA3P55318 RNU6-179P-201ENST00000363350 107 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms