Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RNVU1-2-201ENST00000516326 135 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 CYCSP23-201ENST00000519781 313 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 HMGB1P33-201ENST00000563485 527 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 MIR4703-201ENST00000577728 79 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.12□□□□□ -2.23
BRCA1P38398 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.12□□□□□ -2.23
BRCA1P38398 AC008147.4-201ENST00000617570 1204 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 AC022418.1-201ENST00000624118 445 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 AC005609.4-201ENST00000625071 447 ntBASIC1.12□□□□□ -2.23
BRCA1P38398 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
BRCA1P38398 MIR424-201ENST00000362227 98 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.11□□□□□ -2.23
BRCA1P38398 AL445567.1-201ENST00000439121 144 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 snoU13.9-201ENST00000458927 103 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 snoU13.27-201ENST00000459278 104 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 RNU6-1098P-201ENST00000516772 96 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 RNU6-902P-201ENST00000517212 91 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
BRCA1P38398 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.11□□□□□ -2.23
BRCA1P38398 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC1.11□□□□□ -2.23
BRCA1P38398 AC091925.1-201ENST00000623204 462 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 AC022513.1-201ENST00000624512 117 ntBASIC1.11□□□□□ -2.23
BRCA1P38398 Y_RNA.367-201ENST00000365544 101 ntBASIC1.1□□□□□ -2.23
BRCA1P38398 RNU6-338P-201ENST00000383888 105 ntBASIC1.1□□□□□ -2.23
BRCA1P38398 SNORA26.3-201ENST00000391119 136 ntBASIC1.1□□□□□ -2.23
BRCA1P38398 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.1□□□□□ -2.23
BRCA1P38398 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.1□□□□□ -2.23
BRCA1P38398 AC016925.1-201ENST00000458303 298 ntBASIC1.1□□□□□ -2.23
BRCA1P38398 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.1□□□□□ -2.23
BRCA1P38398 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.1□□□□□ -2.23
BRCA1P38398 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.1□□□□□ -2.23
BRCA1P38398 AC040904.1-201ENST00000590850 223 ntBASIC1.1□□□□□ -2.23
BRCA1P38398 RNU6-1120P-201ENST00000362988 108 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 Y_RNA.115-201ENST00000363272 98 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 U3.9-201ENST00000363823 204 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 RNU6-271P-201ENST00000363858 105 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 SNORA48.1-201ENST00000390879 135 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 RPL30P13-201ENST00000418873 348 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC1.09□□□□□ -2.23
BRCA1P38398 MTCO1P44-201ENST00000441935 243 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC1.09□□□□□ -2.23
BRCA1P38398 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 snoU13.30-201ENST00000458951 104 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AC097473.1-201ENST00000508142 408 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 RNU6-970P-201ENST00000516312 107 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AC008269.2-201ENST00000561915 1105 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 MIR3937-201ENST00000580135 106 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 SNRPGP20-201ENST00000604477 205 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AC069114.2-201ENST00000604699 304 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AC008536.2-201ENST00000607284 349 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 AL355802.3-201ENST00000607571 545 ntBASIC1.09□□□□□ -2.23
BRCA1P38398 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
BRCA1P38398 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.09□□□□□ -2.23
BRCA1P38398 RNU6-17P-201ENST00000384245 107 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 RNU6-18P-201ENST00000384527 107 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 RNY3P10-201ENST00000384764 102 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 SNORA12.2-201ENST00000391040 156 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.09□□□□□ -2.24
BRCA1P38398 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.09□□□□□ -2.24
BRCA1P38398 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.09□□□□□ -2.24
BRCA1P38398 AC145146.1-201ENST00000496370 254 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.09□□□□□ -2.24
BRCA1P38398 MIR548AB-201ENST00000584917 84 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 NIFKP6-201ENST00000598115 845 ntBASIC1.09□□□□□ -2.24
BRCA1P38398 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.09□□□□□ -2.24
BRCA1P38398 AC010615.1-201ENST00000594254 1764 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 C1DP2-201ENST00000418167 426 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 AC060773.1-201ENST00000421698 310 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.08□□□□□ -2.24
BRCA1P38398 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.08□□□□□ -2.24
BRCA1P38398 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.08□□□□□ -2.24
BRCA1P38398 MTND1P22-201ENST00000510572 951 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 SNORD27.1-201ENST00000516319 72 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 RNU6-232P-201ENST00000517144 64 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC1.08□□□□□ -2.24
BRCA1P38398 AP002963.1-201ENST00000530590 184 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.08□□□□□ -2.24
BRCA1P38398 AC005668.1-201ENST00000571142 476 ntBASIC1.08□□□□□ -2.24
BRCA1P38398 SNORD32B-201ENST00000364460 84 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 RNU6-1317P-201ENST00000364582 104 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC1.07□□□□□ -2.24
BRCA1P38398 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.07□□□□□ -2.24
BRCA1P38398 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.07□□□□□ -2.24
BRCA1P38398 RPL30P7-201ENST00000479312 323 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.07□□□□□ -2.24
BRCA1P38398 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.07□□□□□ -2.24
BRCA1P38398 AC005178.1-201ENST00000508392 440 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 SNORA14.1-201ENST00000516113 141 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 SCARNA24.1-201ENST00000516465 137 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 RNA5SP54-201ENST00000516951 92 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 RNU2-46P-201ENST00000517038 113 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.07□□□□□ -2.24
BRCA1P38398 MTND1P24-201ENST00000552175 861 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.07□□□□□ -2.24
BRCA1P38398 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.07□□□□□ -2.24
BRCA1P38398 MIR5006-201ENST00000583027 110 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC1.07□□□□□ -2.24
BRCA1P38398 AC097372.5-201ENST00000623665 376 ntBASIC1.07□□□□□ -2.24
BRCA1P38398 AL450472.1-202ENST00000637286 180 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms