Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU7-57P-201ENST00000459540 60 ntBASIC3.9□□□□□ -1.79
MSX1P28360 RNU5F-4P-201ENST00000516581 114 ntBASIC3.9□□□□□ -1.79
MSX1P28360 RNU6-1098P-201ENST00000516772 96 ntBASIC3.9□□□□□ -1.79
MSX1P28360 RNU6-537P-201ENST00000517277 103 ntBASIC3.9□□□□□ -1.79
MSX1P28360 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.9□□□□□ -1.79
MSX1P28360 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.9□□□□□ -1.79
MSX1P28360 MIR4644-201ENST00000579929 84 ntBASIC3.9□□□□□ -1.79
MSX1P28360 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.9□□□□□ -1.79
MSX1P28360 MIR8059-201ENST00000620427 81 ntBASIC3.9□□□□□ -1.79
MSX1P28360 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
MSX1P28360 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.9□□□□□ -1.79
MSX1P28360 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
MSX1P28360 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSX1P28360 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.9□□□□□ -1.79
MSX1P28360 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.9□□□□□ -1.79
MSX1P28360 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
MSX1P28360 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX1P28360 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
MSX1P28360 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.89□□□□□ -1.79
MSX1P28360 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.89□□□□□ -1.79
MSX1P28360 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
MSX1P28360 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSX1P28360 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.89□□□□□ -1.79
MSX1P28360 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSX1P28360 Y_RNA.116-201ENST00000363292 103 ntBASIC3.89□□□□□ -1.79
MSX1P28360 SNORD32B-201ENST00000364460 84 ntBASIC3.89□□□□□ -1.79
MSX1P28360 MIR93-201ENST00000385024 80 ntBASIC3.89□□□□□ -1.79
MSX1P28360 RNU6-750P-201ENST00000390946 107 ntBASIC3.89□□□□□ -1.79
MSX1P28360 RNY4P30-201ENST00000410216 95 ntBASIC3.89□□□□□ -1.79
MSX1P28360 RNU2-70P-201ENST00000410718 179 ntBASIC3.89□□□□□ -1.79
MSX1P28360 SNORD65B-201ENST00000459126 73 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AC112771.1-201ENST00000463581 102 ntBASIC3.89□□□□□ -1.79
MSX1P28360 RNA5SP49-201ENST00000516450 115 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AC022655.2-201ENST00000577280 318 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AC006130.2-201ENST00000586202 326 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AC025166.1-201ENST00000612411 163 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AL591926.4-201ENST00000616895 298 ntBASIC3.89□□□□□ -1.79
MSX1P28360 MIR6076-201ENST00000617521 113 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
MSX1P28360 MIR7702-201ENST00000621931 59 ntBASIC3.89□□□□□ -1.79
MSX1P28360 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
MSX1P28360 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX1P28360 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.89□□□□□ -1.79
MSX1P28360 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
MSX1P28360 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
MSX1P28360 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSX1P28360 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
MSX1P28360 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSX1P28360 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.88□□□□□ -1.79
MSX1P28360 MIR300-201ENST00000401138 83 ntBASIC3.88□□□□□ -1.79
MSX1P28360 MIR1283-1-201ENST00000408494 87 ntBASIC3.88□□□□□ -1.79
MSX1P28360 RPL23AP46-201ENST00000438548 490 ntBASIC3.88□□□□□ -1.79
MSX1P28360 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.88□□□□□ -1.79
MSX1P28360 RNU7-23P-201ENST00000459465 62 ntBASIC3.88□□□□□ -1.79
MSX1P28360 RPL21P10-201ENST00000463521 490 ntBASIC3.88□□□□□ -1.79
MSX1P28360 AP002884.2-201ENST00000471647 395 ntBASIC3.88□□□□□ -1.79
MSX1P28360 RN7SL691P-201ENST00000494487 301 ntBASIC3.88□□□□□ -1.79
MSX1P28360 AC083906.5-201ENST00000503722 328 ntBASIC3.88□□□□□ -1.79
MSX1P28360 RNA5SP20-201ENST00000515976 84 ntBASIC3.88□□□□□ -1.79
MSX1P28360 AC097639.2-201ENST00000603159 172 ntBASIC3.88□□□□□ -1.79
MSX1P28360 uc_338.28-201ENST00000612082 187 ntBASIC3.88□□□□□ -1.79
MSX1P28360 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.88□□□□□ -1.79
MSX1P28360 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSX1P28360 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
MSX1P28360 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
MSX1P28360 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
MSX1P28360 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.87□□□□□ -1.79
MSX1P28360 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSX1P28360 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
MSX1P28360 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
MSX1P28360 RNU6-508P-201ENST00000363231 103 ntBASIC3.87□□□□□ -1.79
MSX1P28360 Y_RNA.634-201ENST00000364811 113 ntBASIC3.87□□□□□ -1.79
MSX1P28360 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
MSX1P28360 RNA5SP39-201ENST00000411245 120 ntBASIC3.87□□□□□ -1.79
MSX1P28360 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.87□□□□□ -1.79
MSX1P28360 AL353705.1-201ENST00000433468 480 ntBASIC3.87□□□□□ -1.79
MSX1P28360 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.87□□□□□ -1.79
MSX1P28360 RPL32P34-201ENST00000486380 400 ntBASIC3.87□□□□□ -1.79
MSX1P28360 SNORD77.4-201ENST00000516158 81 ntBASIC3.87□□□□□ -1.79
MSX1P28360 RNU6-63P-201ENST00000516690 95 ntBASIC3.87□□□□□ -1.79
MSX1P28360 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.87□□□□□ -1.79
MSX1P28360 AC079598.5-201ENST00000547460 117 ntBASIC3.87□□□□□ -1.79
MSX1P28360 AC069240.1-201ENST00000548774 375 ntBASIC3.87□□□□□ -1.79
MSX1P28360 TVP23BP1-201ENST00000557500 617 ntBASIC3.87□□□□□ -1.79
MSX1P28360 uc_338.4-201ENST00000616635 176 ntBASIC3.87□□□□□ -1.79
MSX1P28360 MIR7154-201ENST00000620673 73 ntBASIC3.87□□□□□ -1.79
MSX1P28360 AC106754.2-201ENST00000623006 233 ntBASIC3.87□□□□□ -1.79
MSX1P28360 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.79
MSX1P28360 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
MSX1P28360 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSX1P28360 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
MSX1P28360 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX1P28360 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
MSX1P28360 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.86□□□□□ -1.79
MSX1P28360 MTND5P18-201ENST00000445624 1801 ntBASIC3.86□□□□□ -1.79
MSX1P28360 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX1P28360 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSX1P28360 Y_RNA.91-201ENST00000363042 107 ntBASIC3.86□□□□□ -1.79
MSX1P28360 RPS29P19-201ENST00000479709 171 ntBASIC3.86□□□□□ -1.79
MSX1P28360 PPBPP1-201ENST00000510807 373 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 163 ms