Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MRPL35P1-201ENST00000404272 572 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 RNU6-1203P-201ENST00000410703 110 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 RNU2-25P-201ENST00000411041 191 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 AC096649.2-201ENST00000416186 393 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD9P28356 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD9P28356 Z96811.1-201ENST00000445880 108 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 AC103975.1-201ENST00000482506 483 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 RPS23P5-201ENST00000495419 428 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD9P28356 RNA5SP282-201ENST00000516355 108 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 SNORD19.2-201ENST00000516978 73 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 RNU6-570P-201ENST00000517051 105 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD9P28356 AC093023.1-201ENST00000547375 507 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 AC090897.2-201ENST00000581715 130 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 Y_RNA.772-201ENST00000606692 102 ntBASIC2.72□□□□□ -1.97
HOXD9P28356 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD9P28356 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXD9P28356 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXD9P28356 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXD9P28356 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.97
HOXD9P28356 AC092268.1-201ENST00000342691 405 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RNU6-222P-201ENST00000362438 107 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 SNORD115-8-201ENST00000363856 82 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 SNORD115-38-201ENST00000365037 82 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RNU6-318P-201ENST00000384283 103 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 BMS1P22-201ENST00000414726 313 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC096920.1-201ENST00000423991 241 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD9P28356 AP000870.1-201ENST00000472927 406 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC107222.1-201ENST00000510899 637 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RNU5F-8P-201ENST00000515941 111 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RNU6-1114P-201ENST00000516022 107 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RNU6-56P-201ENST00000516986 93 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 SNORA31.26-201ENST00000517250 137 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC022868.1-201ENST00000517767 391 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 HSPE1P4-201ENST00000550617 308 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC027288.2-201ENST00000553028 243 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC021231.3-201ENST00000558497 370 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC136932.1-201ENST00000574771 208 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.71□□□□□ -1.98
HOXD9P28356 MIR4300-201ENST00000581016 96 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 MIR4635-201ENST00000583759 79 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AP001282.2-201ENST00000616149 309 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 SDR42E1P4-201ENST00000620894 481 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 AC078938.1-201ENST00000620993 318 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HOXD9P28356 AC093010.3-201ENST00000570269 15214 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.71□□□□□ -1.98
HOXD9P28356 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD9P28356 MTND5P6-201ENST00000422338 1798 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.71□□□□□ -1.98
HOXD9P28356 AC108206.1-201ENST00000570186 4159 ntBASIC2.71□□□□□ -1.98
HOXD9P28356 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.7□□□□□ -1.98
HOXD9P28356 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD9P28356 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD9P28356 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
HOXD9P28356 snoU2_19.2-201ENST00000363024 80 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 SNORA20.1-201ENST00000364790 130 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 Y_RNA.504-201ENST00000384481 104 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 AC244670.1-201ENST00000436879 112 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 AL161651.1-201ENST00000440882 223 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 GPM6BP3-201ENST00000442797 145 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 AC096638.1-201ENST00000444678 216 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD9P28356 SNORA31.6-201ENST00000516241 130 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 RNU5B-3P-201ENST00000516601 115 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 RNU6-1198P-201ENST00000516904 67 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.7□□□□□ -1.98
HOXD9P28356 MIR4659A-201ENST00000580269 81 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 AC012433.1-201ENST00000588916 398 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.7□□□□□ -1.98
HOXD9P28356 MIR6817-201ENST00000615588 66 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 MIR376A1-201ENST00000616574 68 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
HOXD9P28356 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
HOXD9P28356 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
HOXD9P28356 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
HOXD9P28356 RBBP8P1-201ENST00000449447 1844 ntBASIC2.7□□□□□ -1.98
HOXD9P28356 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 Y_RNA.60-201ENST00000362831 98 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 SNORD81.1-201ENST00000363064 77 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 RNA5SP68-201ENST00000363885 119 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 RNU6-281P-201ENST00000384212 103 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 SNORD63-201ENST00000384262 68 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 MIR215-201ENST00000384858 110 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AL079342.1-201ENST00000401460 267 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 RPS26P42-201ENST00000413485 326 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AC004383.1-201ENST00000438135 289 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 RPS15AP7-201ENST00000439294 405 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 RPL39P29-201ENST00000447779 157 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD9P28356 MTND4LP30-201ENST00000454092 297 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD9P28356 RNU6-58P-201ENST00000517143 103 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.69□□□□□ -1.98
HOXD9P28356 AC091152.3-201ENST00000604227 325 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms