Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL353572.1-201ENST00000442490 417 ntBASIC2.03□□□□□ -2.08
BDNFP23560 AC007215.1-201ENST00000464893 276 ntBASIC2.03□□□□□ -2.08
BDNFP23560 RNU6-295P-201ENST00000516901 104 ntBASIC2.03□□□□□ -2.08
BDNFP23560 RNU6-1198P-201ENST00000516904 67 ntBASIC2.03□□□□□ -2.08
BDNFP23560 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.03□□□□□ -2.08
BDNFP23560 AC016925.2-201ENST00000605108 242 ntBASIC2.03□□□□□ -2.08
BDNFP23560 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.03□□□□□ -2.08
BDNFP23560 AL353149.1-201ENST00000610667 244 ntBASIC2.03□□□□□ -2.08
BDNFP23560 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.03□□□□□ -2.08
BDNFP23560 MIR126-201ENST00000362291 85 ntBASIC2.02□□□□□ -2.09
BDNFP23560 RNU6-1235P-201ENST00000384559 107 ntBASIC2.02□□□□□ -2.09
BDNFP23560 CALM2P3-201ENST00000400429 449 ntBASIC2.02□□□□□ -2.09
BDNFP23560 MTCO1P20-201ENST00000425366 358 ntBASIC2.02□□□□□ -2.09
BDNFP23560 CST2P1-201ENST00000425770 87 ntBASIC2.02□□□□□ -2.09
BDNFP23560 AC003989.2-201ENST00000440224 169 ntBASIC2.02□□□□□ -2.09
BDNFP23560 RNU6-498P-201ENST00000459468 107 ntBASIC2.02□□□□□ -2.09
BDNFP23560 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.02□□□□□ -2.09
BDNFP23560 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.02□□□□□ -2.09
BDNFP23560 RNA5SP54-201ENST00000516951 92 ntBASIC2.02□□□□□ -2.09
BDNFP23560 MTND1P35-201ENST00000526739 508 ntBASIC2.02□□□□□ -2.09
BDNFP23560 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.02□□□□□ -2.09
BDNFP23560 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.02□□□□□ -2.09
BDNFP23560 AC146944.4-201ENST00000602697 718 ntBASIC2.02□□□□□ -2.09
BDNFP23560 MIR6845-201ENST00000613182 61 ntBASIC2.02□□□□□ -2.09
BDNFP23560 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.02□□□□□ -2.09
BDNFP23560 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.02□□□□□ -2.09
BDNFP23560 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.02□□□□□ -2.09
BDNFP23560 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
BDNFP23560 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
BDNFP23560 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
BDNFP23560 RNA5SP37-201ENST00000365420 130 ntBASIC2.01□□□□□ -2.09
BDNFP23560 RNU6-338P-201ENST00000383888 105 ntBASIC2.01□□□□□ -2.09
BDNFP23560 RNU6-790P-201ENST00000384479 105 ntBASIC2.01□□□□□ -2.09
BDNFP23560 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.01□□□□□ -2.09
BDNFP23560 NFU1P2-201ENST00000448700 469 ntBASIC2.01□□□□□ -2.09
BDNFP23560 AC019235.1-201ENST00000503847 207 ntBASIC2.01□□□□□ -2.09
BDNFP23560 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.01□□□□□ -2.09
BDNFP23560 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.01□□□□□ -2.09
BDNFP23560 RNA5SP182-201ENST00000516064 82 ntBASIC2.01□□□□□ -2.09
BDNFP23560 AC016727.2-201ENST00000603988 621 ntBASIC2.01□□□□□ -2.09
BDNFP23560 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.01□□□□□ -2.09
BDNFP23560 AL359757.2-201ENST00000624309 274 ntBASIC2.01□□□□□ -2.09
BDNFP23560 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.01□□□□□ -2.09
BDNFP23560 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.01□□□□□ -2.09
BDNFP23560 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
BDNFP23560 SNORD33-201ENST00000362761 85 ntBASIC2□□□□□ -2.09
BDNFP23560 RNU6-862P-201ENST00000362804 105 ntBASIC2□□□□□ -2.09
BDNFP23560 RNU6-296P-201ENST00000384608 107 ntBASIC2□□□□□ -2.09
BDNFP23560 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2□□□□□ -2.09
BDNFP23560 RNU6-1068P-201ENST00000410958 103 ntBASIC2□□□□□ -2.09
BDNFP23560 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2□□□□□ -2.09
BDNFP23560 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2□□□□□ -2.09
BDNFP23560 AK6P1-201ENST00000540219 478 ntBASIC2□□□□□ -2.09
BDNFP23560 AC011494.1-201ENST00000596454 237 ntBASIC2□□□□□ -2.09
BDNFP23560 AL133215.3-201ENST00000609801 448 ntBASIC2□□□□□ -2.09
BDNFP23560 AC048344.4-201ENST00000619744 527 ntBASIC2□□□□□ -2.09
BDNFP23560 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2□□□□□ -2.09
BDNFP23560 BX322639.1-202ENST00000423987 2213 ntBASIC2□□□□□ -2.09
BDNFP23560 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2□□□□□ -2.09
BDNFP23560 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2□□□□□ -2.09
BDNFP23560 RNU6-522P-201ENST00000364497 107 ntBASIC1.99□□□□□ -2.09
BDNFP23560 Y_RNA.530-201ENST00000384587 101 ntBASIC1.99□□□□□ -2.09
BDNFP23560 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.99□□□□□ -2.09
BDNFP23560 JTBP1-201ENST00000441314 247 ntBASIC1.99□□□□□ -2.09
BDNFP23560 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.99□□□□□ -2.09
BDNFP23560 snoU13.23-201ENST00000458863 104 ntBASIC1.99□□□□□ -2.09
BDNFP23560 AC083904.1-201ENST00000487828 231 ntBASIC1.99□□□□□ -2.09
BDNFP23560 RPL23AP63-201ENST00000498752 471 ntBASIC1.99□□□□□ -2.09
BDNFP23560 AC011406.1-201ENST00000512440 370 ntBASIC1.99□□□□□ -2.09
BDNFP23560 RNU6-970P-201ENST00000516312 107 ntBASIC1.99□□□□□ -2.09
BDNFP23560 RRN3P3-201ENST00000549207 578 ntBASIC1.99□□□□□ -2.09
BDNFP23560 MIR4524B-201ENST00000581569 115 ntBASIC1.99□□□□□ -2.09
BDNFP23560 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.99□□□□□ -2.09
BDNFP23560 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.99□□□□□ -2.09
BDNFP23560 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
BDNFP23560 Y_RNA.167-201ENST00000363735 109 ntBASIC1.98□□□□□ -2.09
BDNFP23560 RNU5F-3P-201ENST00000363767 117 ntBASIC1.98□□□□□ -2.09
BDNFP23560 Y_RNA.373-201ENST00000365600 103 ntBASIC1.98□□□□□ -2.09
BDNFP23560 RNU6-418P-201ENST00000384035 107 ntBASIC1.98□□□□□ -2.09
BDNFP23560 RNU6-975P-201ENST00000384296 105 ntBASIC1.98□□□□□ -2.09
BDNFP23560 MIR586-201ENST00000385035 97 ntBASIC1.98□□□□□ -2.09
BDNFP23560 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.98□□□□□ -2.09
BDNFP23560 CYCSP49-201ENST00000420810 319 ntBASIC1.98□□□□□ -2.09
BDNFP23560 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.98□□□□□ -2.09
BDNFP23560 C8orf59P1-201ENST00000429930 303 ntBASIC1.98□□□□□ -2.09
BDNFP23560 HSPE1P9-201ENST00000440046 311 ntBASIC1.98□□□□□ -2.09
BDNFP23560 PCMTD1P1-201ENST00000455560 355 ntBASIC1.98□□□□□ -2.09
BDNFP23560 RNU6-1041P-201ENST00000516254 102 ntBASIC1.98□□□□□ -2.09
BDNFP23560 AC015712.3-201ENST00000559380 164 ntBASIC1.98□□□□□ -2.09
BDNFP23560 DEFB122-202ENST00000569013 197 ntBASIC1.98□□□□□ -2.09
BDNFP23560 FAM157A-202ENST00000615155 405 ntBASIC1.98□□□□□ -2.09
BDNFP23560 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
BDNFP23560 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
BDNFP23560 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
BDNFP23560 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.97□□□□□ -2.09
BDNFP23560 Y_RNA.100-201ENST00000363141 102 ntBASIC1.97□□□□□ -2.09
BDNFP23560 RNU6-254P-201ENST00000363377 107 ntBASIC1.97□□□□□ -2.09
BDNFP23560 RNU6-439P-201ENST00000384188 106 ntBASIC1.97□□□□□ -2.09
BDNFP23560 RNU1-78P-201ENST00000391248 165 ntBASIC1.97□□□□□ -2.09
BDNFP23560 SNORA26.9-201ENST00000391322 122 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms