Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 MIR4703-201ENST00000577728 79 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 MIR5006-201ENST00000583027 110 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 Z99497.2-201ENST00000603634 310 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 TCL6_2.1-201ENST00000615162 119 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC006001.4-201ENST00000622243 395 ntBASIC0.65□□□□□ -2.31
LIMS3P0CW19 AC106754.1-201ENST00000562632 1513 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 RNY4P34-201ENST00000364779 95 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 Y_RNA.287-201ENST00000364853 94 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 RNU11-5P-201ENST00000391216 129 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 RNA5SP467-201ENST00000391274 118 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AL606490.4-201ENST00000423117 127 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC004386.2-201ENST00000441858 148 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.64□□□□□ -2.31
LIMS3P0CW19 snoU13.6-201ENST00000458785 104 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 snoU13.23-201ENST00000458863 104 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 MTND2P14-201ENST00000482139 351 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.64□□□□□ -2.31
LIMS3P0CW19 SNORD79.1-201ENST00000516069 84 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC090142.3-201ENST00000519012 385 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 MIR5695-201ENST00000579717 85 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC146944.4-201ENST00000602697 718 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC106800.4-201ENST00000614905 153 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AL353997.5-201ENST00000618886 171 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.64□□□□□ -2.31
LIMS3P0CW19 MIR6866-201ENST00000638146 69 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 AC009541.1-201ENST00000438279 2662 ntBASIC0.64□□□□□ -2.31
LIMS3P0CW19 Y_RNA.124-201ENST00000363339 93 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 RNU6-1106P-201ENST00000390845 107 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 RPS3AP3-201ENST00000411933 242 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 CDK8P2-201ENST00000415020 547 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.63□□□□□ -2.31
LIMS3P0CW19 MTND5P15-201ENST00000434246 349 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC245047.7-201ENST00000440265 293 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC009237.7-201ENST00000447357 229 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.63□□□□□ -2.31
LIMS3P0CW19 MTATP6P9-201ENST00000515039 680 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 SNORA31.10-201ENST00000516482 106 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 RNU1-142P-201ENST00000516682 145 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 RNU6-922P-201ENST00000516753 99 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AL590705.4-201ENST00000532209 134 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AL121579.1-201ENST00000555129 305 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC015712.3-201ENST00000559380 164 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.63□□□□□ -2.31
LIMS3P0CW19 AGGF1P4-201ENST00000568249 801 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC068790.6-201ENST00000602558 258 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AL022161.1-201ENST00000604390 213 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 AC006566.1-201ENST00000608943 513 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 GHRLOS.1-201ENST00000610995 70 ntBASIC0.63□□□□□ -2.31
LIMS3P0CW19 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.63□□□□□ -2.31
LIMS3P0CW19 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC008163.1-202ENST00000636004 2889 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 RNU4-48P-201ENST00000365559 182 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 RNU6-505P-201ENST00000384427 107 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 MIR1-2-201ENST00000384961 85 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 MIR586-201ENST00000385035 97 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 RPS26P42-201ENST00000413485 326 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.62□□□□□ -2.31
LIMS3P0CW19 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.62□□□□□ -2.31
LIMS3P0CW19 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.62□□□□□ -2.31
LIMS3P0CW19 SCARNA18-201ENST00000459004 134 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC108210.2-201ENST00000503681 201 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC105758.1-201ENST00000506038 399 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.62□□□□□ -2.31
LIMS3P0CW19 RNU6-1069P-201ENST00000516612 133 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 RN7SKP219-201ENST00000516825 296 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.62□□□□□ -2.31
LIMS3P0CW19 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.62□□□□□ -2.31
LIMS3P0CW19 AL390123.1-201ENST00000603216 237 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AL391834.2-201ENST00000609982 546 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 AL513423.1-201ENST00000621695 132 ntBASIC0.62□□□□□ -2.31
LIMS3P0CW19 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
LIMS3P0CW19 Y_RNA.399-201ENST00000383955 105 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 RNU6-1080P-201ENST00000383982 107 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 RPS3AP1-201ENST00000413190 320 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 MTND3P17-201ENST00000416968 344 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 AL354692.1-201ENST00000423044 315 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 TIMM9P3-201ENST00000428659 274 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.61□□□□□ -2.31
LIMS3P0CW19 MTCO2P3-201ENST00000442543 421 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 AL606517.2-201ENST00000442855 241 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.61□□□□□ -2.31
LIMS3P0CW19 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC0.61□□□□□ -2.31
LIMS3P0CW19 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.61□□□□□ -2.31
LIMS3P0CW19 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.61□□□□□ -2.31
LIMS3P0CW19 AL359075.3-201ENST00000613288 217 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 AC091895.1-201ENST00000624494 256 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 SNORD3E-202ENST00000627253 216 ntBASIC0.61□□□□□ -2.31
LIMS3P0CW19 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
LIMS3P0CW19 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.61□□□□□ -2.31
LIMS3P0CW19 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
LIMS3P0CW19 MTND4P4-201ENST00000439033 1366 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 MIR373-201ENST00000362273 69 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 ISCA1P6-201ENST00000427740 390 ntBASIC0.6□□□□□ -2.31
LIMS3P0CW19 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.6□□□□□ -2.31
LIMS3P0CW19 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.6□□□□□ -2.31
LIMS3P0CW19 AC022364.2-201ENST00000457963 554 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 246.1 ms