Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 Y_RNA.269-201ENST00000364685 89 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 Y_RNA.515-201ENST00000384535 112 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 MIR153-2-201ENST00000385225 87 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 Y_RNA.581-201ENST00000391017 97 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 EI24P2-201ENST00000397776 1076 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 SNORD12B-201ENST00000410433 91 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.08□□□□□ -1.92
HLA-DOAP06340 EIF1AXP1-201ENST00000419267 435 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.08□□□□□ -1.92
HLA-DOAP06340 AC012308.1-201ENST00000451232 178 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.08□□□□□ -1.92
HLA-DOAP06340 HSPE1P25-201ENST00000455484 251 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 RNU6-496P-201ENST00000516145 99 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 SNORA31.16-201ENST00000516773 139 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 MIR2355-201ENST00000517199 87 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 AC093331.1-201ENST00000521474 169 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.08□□□□□ -1.92
HLA-DOAP06340 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.08□□□□□ -1.92
HLA-DOAP06340 AC130289.1-201ENST00000577321 73 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 AC013412.1-201ENST00000610687 192 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 MIR3529-201ENST00000637713 78 ntBASIC3.08□□□□□ -1.92
HLA-DOAP06340 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HLA-DOAP06340 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HLA-DOAP06340 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 AC135776.4-201ENST00000624300 1904 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 RNU6-1266P-201ENST00000362794 105 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 Y_RNA.274-201ENST00000364714 101 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 Y_RNA.319-201ENST00000365138 92 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 RNU1-139P-201ENST00000391307 165 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 ARF4P2-201ENST00000430209 526 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 AC096638.1-201ENST00000444678 216 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 RNU7-23P-201ENST00000459465 62 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 RNU5F-8P-201ENST00000515941 111 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 RNU6-1114P-201ENST00000516022 107 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AC091152.3-201ENST00000604227 325 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AC004832.5-201ENST00000608677 401 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AL359198.2-201ENST00000611836 194 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AL357075.2-201ENST00000614906 189 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 AC005296.1-201ENST00000616145 209 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.07□□□□□ -1.92
HLA-DOAP06340 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.07□□□□□ -1.92
HLA-DOAP06340 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.06□□□□□ -1.92
HLA-DOAP06340 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HLA-DOAP06340 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
HLA-DOAP06340 MIR335-201ENST00000362173 94 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RNU6-961P-201ENST00000363893 105 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RNU6-200P-201ENST00000364743 107 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RNU6-281P-201ENST00000384212 103 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 Y_RNA.478-201ENST00000384358 107 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RNU6-541P-201ENST00000384709 110 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 MIR548H3-201ENST00000408771 118 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RNU6-1077P-201ENST00000410506 102 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.06□□□□□ -1.92
HLA-DOAP06340 AC005002.2-201ENST00000438228 269 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RPL39P29-201ENST00000447779 157 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 RPL26P26-201ENST00000480251 434 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 SRIP1-201ENST00000489235 288 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 SNORA31.1-201ENST00000515993 133 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 SNORA31.5-201ENST00000516190 133 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.06□□□□□ -1.92
HLA-DOAP06340 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.06□□□□□ -1.92
HLA-DOAP06340 MIR5571-201ENST00000577998 113 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 AC009779.6-201ENST00000603972 165 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 AC010889.1-201ENST00000566193 2666 ntBASIC3.06□□□□□ -1.92
HLA-DOAP06340 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HLA-DOAP06340 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.05□□□□□ -1.92
HLA-DOAP06340 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 SNORD6-201ENST00000365444 73 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 RNU6-622P-201ENST00000384272 103 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 RNU6-19P-201ENST00000384718 107 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 MIR27B-201ENST00000385129 97 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 RNU6-159P-201ENST00000391080 106 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 BMS1P22-201ENST00000414726 313 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 AC138623.1-201ENST00000418060 216 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 AC244505.4-201ENST00000434905 287 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 SSXP5-201ENST00000443473 287 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 RPL23AP62-201ENST00000463396 453 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 RNU6-58P-201ENST00000517143 103 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 AC090897.2-201ENST00000581715 130 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 U4.3-201ENST00000621047 82 ntBASIC3.05□□□□□ -1.92
HLA-DOAP06340 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HLA-DOAP06340 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HLA-DOAP06340 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.05□□□□□ -1.92
HLA-DOAP06340 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.04□□□□□ -1.92
HLA-DOAP06340 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DOAP06340 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DOAP06340 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HLA-DOAP06340 RNA5SP295-201ENST00000362655 121 ntBASIC3.04□□□□□ -1.92
HLA-DOAP06340 RNU6-1141P-201ENST00000364520 107 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 161.5 ms