Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNU6-82P-201ENST00000363970 107 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 Y_RNA.378-201ENST00000365652 113 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 RNU6-360P-201ENST00000390944 104 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.49□□□□□ -2.17
CLDN3O15551 MIR300-201ENST00000401138 83 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 FGF7P8-201ENST00000402994 292 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 AL663109.1-201ENST00000411498 844 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.49□□□□□ -2.17
CLDN3O15551 FTH1P12-201ENST00000432137 551 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 JTBP1-201ENST00000441314 247 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 RPS29P27-201ENST00000463711 170 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 RPL26P26-201ENST00000480251 434 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 AC010486.3-201ENST00000511602 785 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.49□□□□□ -2.17
CLDN3O15551 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.49□□□□□ -2.17
CLDN3O15551 DEFB131C-201ENST00000528817 165 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 AP003034.1-201ENST00000534621 422 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 MIR5006-201ENST00000583027 110 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 MIR3976-201ENST00000606807 139 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 snoU13.31-201ENST00000607291 104 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 FER-210ENST00000628534 558 ntTSL 5 BASIC1.49□□□□□ -2.17
CLDN3O15551 ICE2P2-201ENST00000483823 2787 ntBASIC1.49□□□□□ -2.17
CLDN3O15551 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
CLDN3O15551 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.48□□□□□ -2.17
CLDN3O15551 Y_RNA.123-201ENST00000363338 102 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 RNU6-271P-201ENST00000363858 105 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 RNU6-1019P-201ENST00000364424 107 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 RNU6-1329P-201ENST00000365664 107 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 Y_RNA.582-201ENST00000391023 95 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 RNU1-78P-201ENST00000391248 165 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 MIR1283-1-201ENST00000408494 87 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 AC245047.4-201ENST00000433189 144 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 AC004386.2-201ENST00000441858 148 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.48□□□□□ -2.17
CLDN3O15551 SNORA19.2-201ENST00000516013 114 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 RNU6-1069P-201ENST00000516612 133 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 RNU6-856P-201ENST00000516959 98 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.48□□□□□ -2.17
CLDN3O15551 AC084364.2-201ENST00000546924 395 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 AL118558.2-201ENST00000556294 238 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 SNORA77B-201ENST00000578179 125 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 CTHRC1P1-201ENST00000605383 469 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.48□□□□□ -2.17
CLDN3O15551 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.48□□□□□ -2.17
CLDN3O15551 Y_RNA.77-201ENST00000362962 107 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 Y_RNA.409-201ENST00000383990 98 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 RNU6-203P-201ENST00000384038 104 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 RNU6-968P-201ENST00000384076 107 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
CLDN3O15551 CDK8P2-201ENST00000415020 547 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 TIMM9P3-201ENST00000428659 274 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 C8orf59P1-201ENST00000429930 303 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 MTCO3P29-201ENST00000432119 779 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 RNA5SP481-201ENST00000516814 122 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC1.47□□□□□ -2.17
CLDN3O15551 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.47□□□□□ -2.17
CLDN3O15551 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.47□□□□□ -2.17
CLDN3O15551 MIR4498-201ENST00000577599 66 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 MIR5692C1-201ENST00000585309 91 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 AC023043.2-201ENST00000589678 1026 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 AC016727.2-201ENST00000603988 621 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.47□□□□□ -2.17
CLDN3O15551 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.46□□□□□ -2.17
CLDN3O15551 RNU6-38P-201ENST00000384085 107 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 MIR548B-201ENST00000385247 97 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AF228730.1-201ENST00000397972 663 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 MRPS10P2-201ENST00000431226 381 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 MTCO2P16-201ENST00000436962 677 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.46□□□□□ -2.18
CLDN3O15551 RNU6-261P-201ENST00000459506 102 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 MTCYBP18-201ENST00000501056 747 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC091133.4-201ENST00000511142 308 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC067942.3-201ENST00000512025 362 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC011406.1-201ENST00000512440 370 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.46□□□□□ -2.18
CLDN3O15551 SCOCP1-201ENST00000554676 349 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC026470.2-201ENST00000561492 181 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AP000907.4-201ENST00000604143 237 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 RMST_3.1-201ENST00000611651 109 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AC126177.8-201ENST00000618339 1015 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 AL359697.1-201ENST00000624879 587 ntBASIC1.46□□□□□ -2.18
CLDN3O15551 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
CLDN3O15551 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.46□□□□□ -2.18
CLDN3O15551 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.45□□□□□ -2.18
CLDN3O15551 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.45□□□□□ -2.18
CLDN3O15551 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
CLDN3O15551 RNU1-62P-201ENST00000362599 164 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 Y_RNA.338-201ENST00000365320 114 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 RNU6-1286P-201ENST00000383871 107 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 RNU6-214P-201ENST00000384130 107 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 RNY3P9-201ENST00000384727 106 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 MIR549A-201ENST00000385268 96 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 AC004965.1-201ENST00000413033 213 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 AC060773.1-201ENST00000421698 310 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC1.45□□□□□ -2.18
CLDN3O15551 AL359672.1-201ENST00000442302 409 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.45□□□□□ -2.18
CLDN3O15551 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.45□□□□□ -2.18
CLDN3O15551 RPS29P23-201ENST00000458635 123 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms