Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AL133475.1-201ENST00000404414 305 ntBASIC3.82□□□□□ -1.8
SOX1O00570 AL355497.1-201ENST00000406262 551 ntBASIC3.82□□□□□ -1.8
SOX1O00570 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX1O00570 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.82□□□□□ -1.8
SOX1O00570 HLA-N-201ENST00000437516 135 ntBASIC3.82□□□□□ -1.8
SOX1O00570 AL137159.1-201ENST00000452808 512 ntBASIC3.82□□□□□ -1.8
SOX1O00570 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.82□□□□□ -1.8
SOX1O00570 AC091179.1-201ENST00000461606 579 ntBASIC3.82□□□□□ -1.8
SOX1O00570 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX1O00570 DEFB131C-201ENST00000528817 165 ntBASIC3.82□□□□□ -1.8
SOX1O00570 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.82□□□□□ -1.8
SOX1O00570 MIR5006-201ENST00000583027 110 ntBASIC3.82□□□□□ -1.8
SOX1O00570 Y_RNA.802-201ENST00000614892 130 ntBASIC3.82□□□□□ -1.8
SOX1O00570 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.82□□□□□ -1.8
SOX1O00570 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SOX1O00570 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
SOX1O00570 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SOX1O00570 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX1O00570 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX1O00570 AC134026.1-201ENST00000623249 2239 ntBASIC3.81□□□□□ -1.8
SOX1O00570 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
SOX1O00570 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX1O00570 RNU4-15P-201ENST00000362613 141 ntBASIC3.81□□□□□ -1.8
SOX1O00570 SNORD114-19-201ENST00000363072 75 ntBASIC3.81□□□□□ -1.8
SOX1O00570 Y_RNA.273-201ENST00000364703 102 ntBASIC3.81□□□□□ -1.8
SOX1O00570 Y_RNA.337-201ENST00000365312 102 ntBASIC3.81□□□□□ -1.8
SOX1O00570 Y_RNA.353-201ENST00000365440 108 ntBASIC3.81□□□□□ -1.8
SOX1O00570 Y_RNA.368-201ENST00000365547 113 ntBASIC3.81□□□□□ -1.8
SOX1O00570 AC245291.1-201ENST00000419501 328 ntBASIC3.81□□□□□ -1.8
SOX1O00570 MTND4LP9-201ENST00000427694 174 ntBASIC3.81□□□□□ -1.8
SOX1O00570 TOMM22P2-201ENST00000430735 237 ntBASIC3.81□□□□□ -1.8
SOX1O00570 AC146507.2-201ENST00000460608 476 ntBASIC3.81□□□□□ -1.8
SOX1O00570 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.81□□□□□ -1.8
SOX1O00570 AC091544.4-201ENST00000555268 342 ntBASIC3.81□□□□□ -1.8
SOX1O00570 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.81□□□□□ -1.8
SOX1O00570 MIR5688-201ENST00000580619 83 ntBASIC3.81□□□□□ -1.8
SOX1O00570 MIR4524B-201ENST00000581569 115 ntBASIC3.81□□□□□ -1.8
SOX1O00570 AL359881.1-201ENST00000602916 267 ntBASIC3.81□□□□□ -1.8
SOX1O00570 MIR6076-201ENST00000617521 113 ntBASIC3.81□□□□□ -1.8
SOX1O00570 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX1O00570 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SOX1O00570 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
SOX1O00570 AF127577.6-201ENST00000623352 2191 ntBASIC3.8□□□□□ -1.8
SOX1O00570 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX1O00570 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX1O00570 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX1O00570 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX1O00570 Y_RNA.40-201ENST00000362645 93 ntBASIC3.8□□□□□ -1.8
SOX1O00570 Y_RNA.127-201ENST00000363386 109 ntBASIC3.8□□□□□ -1.8
SOX1O00570 RNU4-10P-201ENST00000364383 140 ntBASIC3.8□□□□□ -1.8
SOX1O00570 Y_RNA.261-201ENST00000364631 102 ntBASIC3.8□□□□□ -1.8
SOX1O00570 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SOX1O00570 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SOX1O00570 AC004866.1-201ENST00000411748 78 ntBASIC3.8□□□□□ -1.8
SOX1O00570 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX1O00570 AIMP1P2-201ENST00000425294 312 ntBASIC3.8□□□□□ -1.8
SOX1O00570 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.8□□□□□ -1.8
SOX1O00570 AL714022.1-201ENST00000439897 151 ntBASIC3.8□□□□□ -1.8
SOX1O00570 AP002884.2-201ENST00000471647 395 ntBASIC3.8□□□□□ -1.8
SOX1O00570 RPL23AP70-201ENST00000483361 460 ntBASIC3.8□□□□□ -1.8
SOX1O00570 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.8□□□□□ -1.8
SOX1O00570 SNORA25.12-201ENST00000516202 82 ntBASIC3.8□□□□□ -1.8
SOX1O00570 RNU2-44P-201ENST00000516795 194 ntBASIC3.8□□□□□ -1.8
SOX1O00570 AC109810.1-201ENST00000534066 224 ntBASIC3.8□□□□□ -1.8
SOX1O00570 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.8□□□□□ -1.8
SOX1O00570 AC011266.1-201ENST00000624119 3569 ntBASIC3.8□□□□□ -1.8
SOX1O00570 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX1O00570 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SOX1O00570 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.8□□□□□ -1.8
SOX1O00570 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SOX1O00570 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SOX1O00570 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
SOX1O00570 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
SOX1O00570 AC068700.1-201ENST00000565862 3754 ntBASIC3.79□□□□□ -1.8
SOX1O00570 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX1O00570 RNU1-75P-201ENST00000347264 129 ntBASIC3.79□□□□□ -1.8
SOX1O00570 Y_RNA.24-201ENST00000362508 103 ntBASIC3.79□□□□□ -1.8
SOX1O00570 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.79□□□□□ -1.8
SOX1O00570 MIR539-201ENST00000365690 78 ntBASIC3.79□□□□□ -1.8
SOX1O00570 Y_RNA.456-201ENST00000384232 111 ntBASIC3.79□□□□□ -1.8
SOX1O00570 MIR616-201ENST00000385293 97 ntBASIC3.79□□□□□ -1.8
SOX1O00570 RNA5SP424-201ENST00000390988 115 ntBASIC3.79□□□□□ -1.8
SOX1O00570 RPL23AP48-201ENST00000406913 488 ntBASIC3.79□□□□□ -1.8
SOX1O00570 RNA5SP306-201ENST00000411087 107 ntBASIC3.79□□□□□ -1.8
SOX1O00570 AL365496.1-201ENST00000426885 215 ntBASIC3.79□□□□□ -1.8
SOX1O00570 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX1O00570 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.79□□□□□ -1.8
SOX1O00570 RNU6-971P-201ENST00000516920 106 ntBASIC3.79□□□□□ -1.8
SOX1O00570 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.79□□□□□ -1.8
SOX1O00570 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX1O00570 AL136360.1-201ENST00000503377 1900 ntBASIC3.79□□□□□ -1.8
SOX1O00570 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SOX1O00570 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.79□□□□□ -1.8
SOX1O00570 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SOX1O00570 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX1O00570 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX1O00570 AC007496.3-201ENST00000624987 3443 ntBASIC3.78□□□□□ -1.8
SOX1O00570 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
SOX1O00570 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
SOX1O00570 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms