Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 AC009994.1-201ENST00000606889 253 ntBASIC1.89□□□□□ -2.11
NKX6-3A6NJ46 SDR42E1P4-201ENST00000620894 481 ntBASIC1.89□□□□□ -2.11
NKX6-3A6NJ46 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
NKX6-3A6NJ46 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
NKX6-3A6NJ46 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 MTND4P12-201ENST00000498999 1377 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AP006437.1-201ENST00000641440 3685 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 RNU4-9P-201ENST00000364951 139 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.404-201ENST00000383978 102 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 RNY3P14-201ENST00000384309 102 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.482-201ENST00000384377 111 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 SNORA3.2-201ENST00000408221 125 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 RNU6-174P-201ENST00000410406 106 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 RNU6-370P-201ENST00000411008 104 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 OR2AQ1P-201ENST00000451972 200 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 RPL30P10-201ENST00000488148 337 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AP005660.1-201ENST00000522972 293 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AC005520.5-201ENST00000613926 164 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AC098657.3-201ENST00000620434 263 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 AC099654.5-201ENST00000636479 350 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 ZNF204P-201ENST00000416749 2397 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 CENPCP1-201ENST00000533085 2578 ntBASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
NKX6-3A6NJ46 RNU6-438P-201ENST00000365561 103 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 SNORA75.4-201ENST00000391278 119 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 RNU2-40P-201ENST00000410833 196 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 AL356320.1-201ENST00000429616 163 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 AC004386.2-201ENST00000441858 148 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.635-201ENST00000459041 101 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.691-201ENST00000516611 103 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 RNU2-44P-201ENST00000516795 194 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 AP001094.1-201ENST00000579805 193 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 MIR5006-201ENST00000583027 110 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 SCARNA4-201ENST00000629045 128 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 ZNF299P-201ENST00000406845 1804 ntBASIC1.87□□□□□ -2.11
NKX6-3A6NJ46 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 RNU6-545P-201ENST00000362681 104 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.356-201ENST00000365475 113 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.405-201ENST00000383979 100 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.451-201ENST00000384200 100 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 SNORA70B-201ENST00000384210 135 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 U8.10-201ENST00000384260 133 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 RNU6-1026P-201ENST00000384465 108 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.524-201ENST00000384564 100 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.561-201ENST00000384694 100 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 MIR221-201ENST00000385135 110 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AL357139.1-201ENST00000407792 426 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC243428.1-201ENST00000421099 264 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 OOSP1P1-201ENST00000423265 274 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 BX510359.4-201ENST00000423750 193 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AL035666.1-201ENST00000446195 348 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 MTCO3P8-201ENST00000453691 755 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 snoU13.30-201ENST00000458951 104 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 TRBV12-1-201ENST00000479785 344 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC132942.1-201ENST00000486753 483 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 RPS23P5-201ENST00000495419 428 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 RNU6-120P-201ENST00000516077 103 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 RNU6-559P-201ENST00000516151 98 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 SCARNA16.2-201ENST00000516520 172 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 MIR5696-201ENST00000578474 85 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC078899.2-201ENST00000595282 212 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC008749.1-201ENST00000597650 306 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 7SK.7-201ENST00000603504 247 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AC005562.2-201ENST00000618264 111 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 AL669831.3-213ENST00000636676 183 ntBASIC1.86□□□□□ -2.11
NKX6-3A6NJ46 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 Y_RNA.70-201ENST00000362886 110 ntBASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 RNU6-593P-201ENST00000364716 112 ntBASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 RNU6-596P-201ENST00000365395 98 ntBASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 RNA5SP37-201ENST00000365420 130 ntBASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 SNORD14D-201ENST00000384390 87 ntBASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 RNU6-541P-201ENST00000384709 110 ntBASIC1.85□□□□□ -2.11
NKX6-3A6NJ46 SNORA12.2-201ENST00000391040 156 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms