Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNA5SP42-201ENST00000364278 115 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-312P-201ENST00000364629 107 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 RNA5SP267-201ENST00000364893 126 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 SNORA18.3-201ENST00000384122 132 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-1310P-201ENST00000384153 107 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 SNORA22C-201ENST00000384614 134 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 Y_RNA.586-201ENST00000391146 98 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AP000567.1-201ENST00000406413 156 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AC004866.1-201ENST00000411748 78 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 BX510359.1-201ENST00000456973 237 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-579P-201ENST00000516879 102 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 AL365222.1-201ENST00000614661 98 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 MIR3199-2-201ENST00000636243 86 ntBASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CHMP3Q9Y3E7 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 Y_RNA.40-201ENST00000362645 93 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-1027P-201ENST00000383998 107 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-1154P-201ENST00000391001 104 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 U3.40-201ENST00000408706 208 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 AC023141.4-201ENST00000412031 328 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 RNU2-27P-201ENST00000516185 142 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-313P-201ENST00000516317 112 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-479P-201ENST00000516348 105 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-107P-201ENST00000516643 102 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 IGKV2-26-201ENST00000518305 343 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 AC100767.1-201ENST00000528178 123 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 HIGD1AP1-201ENST00000550979 275 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 TGIF1P1-201ENST00000558095 802 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 HSPE1P7-201ENST00000604681 321 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 AL137843.1-201ENST00000605078 385 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 U6.98-201ENST00000637157 84 ntBASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.32□□□□□ -1.72
CHMP3Q9Y3E7 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AC002543.1-201ENST00000299783 1954 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 Y_RNA.23-201ENST00000362496 106 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 RNU1-62P-201ENST00000362599 164 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-151P-201ENST00000364158 107 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 RNU4-10P-201ENST00000364383 140 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 SNORD87-201ENST00000364849 89 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-417P-201ENST00000384712 107 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 RPL23AP83-201ENST00000434984 473 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 snoU13.28-201ENST00000459235 104 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-62P-201ENST00000516526 102 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 SNORA70.24-201ENST00000517233 118 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AC115990.1-201ENST00000526957 301 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AC009127.3-201ENST00000570531 403 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AL356575.1-201ENST00000603008 283 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 AC005520.5-201ENST00000613926 164 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
CHMP3Q9Y3E7 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 Y_RNA.81-201ENST00000362997 102 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-529P-201ENST00000363383 104 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-801P-201ENST00000364087 105 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 MIR23A-201ENST00000385245 73 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 RNU6-257P-201ENST00000410238 98 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 AC006989.1-201ENST00000427212 131 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 RN7SL594P-201ENST00000470590 287 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 RN7SL601P-201ENST00000471221 293 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 AC011471.1-201ENST00000585766 187 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 AL034555.1-201ENST00000604816 211 ntBASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
CHMP3Q9Y3E7 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms