Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 DAP3P1-201ENST00000441522 278 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC079354.2-201ENST00000453523 154 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 RPL23AP3-201ENST00000453844 468 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 PRELID3BP1-201ENST00000457142 540 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 RNU6-717P-201ENST00000459076 104 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AF186996.7-201ENST00000492781 209 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 RNU1-40P-201ENST00000516816 164 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 RNU1-97P-201ENST00000516872 164 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC109446.1-201ENST00000566172 220 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 FGF7P1-201ENST00000582820 288 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC002984.1-201ENST00000591692 448 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AL096840.1-201ENST00000603287 93 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC005034.5-201ENST00000604219 466 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC009994.1-201ENST00000606889 253 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 KPNA2P1-201ENST00000458289 1591 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 Y_RNA.72-201ENST00000362894 103 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 U3.9-201ENST00000363823 204 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 RNA5SP37-201ENST00000365420 130 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 RNU6-510P-201ENST00000391239 108 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AL353689.1-201ENST00000438895 199 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 EIF4A1P12-201ENST00000551910 141 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 MIR4287-201ENST00000579398 78 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 MIR4448-201ENST00000584360 86 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 POLR3GP2-201ENST00000588366 668 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AC124303.1-201ENST00000605703 360 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 AC019193.3-201ENST00000609144 554 ntBASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
CPSF3Q9UKF6 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 MTND3P8-201ENST00000412909 339 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AL158823.1-201ENST00000418441 478 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 MTND2P29-201ENST00000438595 412 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AL353572.1-201ENST00000442490 417 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 FTH1P25-201ENST00000447665 469 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AC245102.2-201ENST00000448956 180 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 PPP1R2P5-201ENST00000457256 603 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 Y_RNA.682-201ENST00000516457 100 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 MIR4790-201ENST00000577799 79 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AC011712.1-201ENST00000588959 234 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AL359314.1-201ENST00000616913 261 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 ZNF702P-202ENST00000434269 1966 ntBASIC2.1□□□□□ -2.07
CPSF3Q9UKF6 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 CBX3P1-201ENST00000325243 554 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 Y_RNA.160-201ENST00000363677 92 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 Y_RNA.279-201ENST00000364763 95 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 RNU6-234P-201ENST00000365229 104 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 RNU6-1283P-201ENST00000365314 105 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 RNU6-26P-201ENST00000383985 107 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 MT-TL1-201ENST00000386347 75 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 U8.13-201ENST00000390842 128 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 FGF7P8-201ENST00000402994 292 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 MIR1289-2-201ENST00000408360 111 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 RNA5SP494-201ENST00000410653 129 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 RNU2-41P-201ENST00000410991 178 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AC096920.1-201ENST00000423991 241 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 MTND5P5-201ENST00000503764 376 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 MRPS17P9-201ENST00000511924 393 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 RNU6-991P-201ENST00000516168 107 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AL158827.2-201ENST00000602494 330 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AL022345.1-201ENST00000607292 135 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AL691447.3-201ENST00000635020 330 ntBASIC2.09□□□□□ -2.07
CPSF3Q9UKF6 AC233981.2-201ENST00000611524 1614 ntBASIC2.09□□□□□ -2.08
CPSF3Q9UKF6 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 RNU6-1093P-201ENST00000391194 107 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 226.3 ms