Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-625P-201ENST00000459412 107 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AC146507.2-201ENST00000460608 476 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AC080013.2-201ENST00000460866 323 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AC117440.1-201ENST00000474107 571 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RNU2-44P-201ENST00000516795 194 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RNU6-1271P-201ENST00000517049 105 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RNU1-70P-201ENST00000362618 164 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 SNORD81.1-201ENST00000363064 77 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.105-201ENST00000363182 111 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 SNORA72.2-201ENST00000365028 127 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 RNU6-1310P-201ENST00000384153 107 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.476-201ENST00000384347 108 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 RNU6-21P-201ENST00000384710 107 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 RNU6-1328P-201ENST00000410938 106 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 RNU2-25P-201ENST00000411041 191 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC006028.1-201ENST00000438379 402 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC009969.1-201ENST00000438726 172 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 Z75741.1-201ENST00000446793 314 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 CYP2C59P-201ENST00000457790 269 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 RPL26P26-201ENST00000480251 434 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC023141.11-201ENST00000508864 202 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC068657.1-201ENST00000520807 306 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AK6P2-201ENST00000549020 471 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC018448.1-201ENST00000552843 316 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 MIR5680-201ENST00000577577 84 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC005176.2-201ENST00000596933 147 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC011373.1-201ENST00000607270 237 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 MIR7112-201ENST00000616126 65 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC073346.2-201ENST00000624724 2058 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 AC080128.1-201ENST00000474389 1917 ntBASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
TRIM39Q9HCM9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 MIR148B-201ENST00000362252 99 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RNU6-626P-201ENST00000363354 107 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 SNORD113-8-201ENST00000363497 74 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RNU6-727P-201ENST00000363592 107 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 SNORD32B-201ENST00000364460 84 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RNU6-20P-201ENST00000384106 107 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.483-201ENST00000384380 101 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.489-201ENST00000384410 101 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 MT-TW-201ENST00000387382 68 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 SNORA12-201ENST00000391162 147 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 AL357075.1-201ENST00000404107 726 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RNU4-47P-201ENST00000410876 114 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 BX510359.1-201ENST00000456973 237 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RPS23P5-201ENST00000495419 428 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 AC083906.5-201ENST00000503722 328 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 SEPT14P8-201ENST00000508026 178 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RNU5F-4P-201ENST00000516581 114 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RNU7-110P-201ENST00000516891 62 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 RRN3P3-201ENST00000549207 578 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 MIR3616-201ENST00000584070 92 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 SNORD113-5-201ENST00000607261 78 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
TRIM39Q9HCM9 AC010615.1-201ENST00000594254 1764 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 RNU4-90P-201ENST00000362773 141 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.84-201ENST00000363011 104 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 RNA5SP240-201ENST00000365355 128 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.581-201ENST00000391017 97 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 RNU2-20P-201ENST00000410425 191 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.602-201ENST00000410535 92 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 CST9LP2-201ENST00000437612 320 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 RPL23AP58-201ENST00000440453 469 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 RNU6-1132P-201ENST00000459214 107 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 AL713866.2-201ENST00000603579 219 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 YPEL5P2-201ENST00000605553 359 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 AC068205.3-201ENST00000636385 468 ntBASIC3.21□□□□□ -1.9
TRIM39Q9HCM9 Z82209.1-201ENST00000422141 2135 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 RNA5SP383-201ENST00000362934 120 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 SNORA38.1-201ENST00000364172 131 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 RNA5SP387-201ENST00000364226 106 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.350-201ENST00000365409 98 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 RNU6-1274P-201ENST00000384557 107 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms