Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 Y_RNA.557-201ENST00000384680 107 ntBASIC2.53□□□□□ -2
NPAS1Q99742 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.53□□□□□ -2
NPAS1Q99742 RNA5SP201-201ENST00000410316 124 ntBASIC2.53□□□□□ -2
NPAS1Q99742 RNU2-32P-201ENST00000411193 191 ntBASIC2.53□□□□□ -2
NPAS1Q99742 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.53□□□□□ -2
NPAS1Q99742 MCFD2P1-201ENST00000417812 300 ntBASIC2.53□□□□□ -2
NPAS1Q99742 PMCHL1-202ENST00000423102 261 ntBASIC2.53□□□□□ -2
NPAS1Q99742 MTND4P19-201ENST00000446659 478 ntBASIC2.53□□□□□ -2
NPAS1Q99742 AP001486.1-201ENST00000463339 476 ntBASIC2.53□□□□□ -2
NPAS1Q99742 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.53□□□□□ -2
NPAS1Q99742 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.53□□□□□ -2
NPAS1Q99742 RNU5F-4P-201ENST00000516581 114 ntBASIC2.53□□□□□ -2
NPAS1Q99742 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.53□□□□□ -2
NPAS1Q99742 MIR5006-201ENST00000583027 110 ntBASIC2.53□□□□□ -2
NPAS1Q99742 AL356575.1-201ENST00000603008 283 ntBASIC2.53□□□□□ -2
NPAS1Q99742 RPL12P50-201ENST00000603116 116 ntBASIC2.53□□□□□ -2
NPAS1Q99742 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.53□□□□□ -2
NPAS1Q99742 AC090115.4-201ENST00000609970 188 ntBASIC2.53□□□□□ -2
NPAS1Q99742 AC087588.2-201ENST00000617667 426 ntBASIC2.53□□□□□ -2
NPAS1Q99742 U2.1-201ENST00000618978 145 ntBASIC2.53□□□□□ -2
NPAS1Q99742 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
NPAS1Q99742 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.52□□□□□ -2.01
NPAS1Q99742 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.52□□□□□ -2.01
NPAS1Q99742 Y_RNA.80-201ENST00000362996 102 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU5F-3P-201ENST00000363767 117 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU4-42P-201ENST00000364738 142 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU1-115P-201ENST00000365329 160 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 SNORA18.2-201ENST00000383865 132 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU6-26P-201ENST00000383985 107 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 Y_RNA.424-201ENST00000384063 103 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 Y_RNA.485-201ENST00000384395 102 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU6-851P-201ENST00000384565 107 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 MIR561-201ENST00000385216 97 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 NDUFB4P4-201ENST00000404822 243 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 Y_RNA.592-201ENST00000410274 109 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU2-25P-201ENST00000411041 191 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 COTL1P1-201ENST00000422309 375 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 CBX3P6-201ENST00000430257 527 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.52□□□□□ -2.01
NPAS1Q99742 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.52□□□□□ -2.01
NPAS1Q99742 RNU6-1114P-201ENST00000516022 107 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 RPPH1-2P-201ENST00000516688 293 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 Y_RNA.711-201ENST00000516993 102 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 CBX3P7-201ENST00000532876 502 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AC107016.2-201ENST00000547968 190 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AC027288.2-201ENST00000553028 243 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 ANP32BP3-201ENST00000559213 706 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.52□□□□□ -2.01
NPAS1Q99742 LARP7P3-201ENST00000579888 337 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.52□□□□□ -2.01
NPAS1Q99742 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.52□□□□□ -2.01
NPAS1Q99742 AC040896.1-201ENST00000613819 479 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AC005562.2-201ENST00000618264 111 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AL138825.1-201ENST00000618587 192 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 AC010297.1-201ENST00000623948 149 ntBASIC2.52□□□□□ -2.01
NPAS1Q99742 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
NPAS1Q99742 AP006437.1-201ENST00000641440 3685 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 RNU6-137P-201ENST00000363680 108 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 RNU6-159P-201ENST00000391080 106 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 MTCO3P19-201ENST00000415864 321 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.51□□□□□ -2.01
NPAS1Q99742 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.51□□□□□ -2.01
NPAS1Q99742 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.51□□□□□ -2.01
NPAS1Q99742 AC004386.2-201ENST00000441858 148 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 RNU7-26P-201ENST00000458980 63 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 AL049873.1-201ENST00000480540 376 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 RPS23P5-201ENST00000495419 428 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.51□□□□□ -2.01
NPAS1Q99742 RNU2-44P-201ENST00000516795 194 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 AC026470.2-201ENST00000561492 181 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 AC023824.2-201ENST00000566185 400 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 VN1R91P-201ENST00000594377 169 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 RPS29P30-201ENST00000600975 111 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 AL606534.2-204ENST00000635008 178 ntBASIC2.51□□□□□ -2.01
NPAS1Q99742 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
NPAS1Q99742 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.51□□□□□ -2.01
NPAS1Q99742 RNU6-873P-201ENST00000363833 107 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
NPAS1Q99742 AL356057.3-201ENST00000402607 340 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AC003685.2-201ENST00000422795 395 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AC087499.2-201ENST00000432861 149 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AC112220.1-201ENST00000434628 355 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.5□□□□□ -2.01
NPAS1Q99742 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.5□□□□□ -2.01
NPAS1Q99742 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.5□□□□□ -2.01
NPAS1Q99742 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.5□□□□□ -2.01
NPAS1Q99742 AC107032.1-201ENST00000485945 480 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AC132942.1-201ENST00000486753 483 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.5□□□□□ -2.01
NPAS1Q99742 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.5□□□□□ -2.01
NPAS1Q99742 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 RNA5SP367-201ENST00000516557 118 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 RNU4-77P-201ENST00000516692 156 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 GNAI2P1-201ENST00000541815 315 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.5□□□□□ -2.01
NPAS1Q99742 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.5□□□□□ -2.01
NPAS1Q99742 ZNF861P-201ENST00000588126 639 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 Y_RNA.812-201ENST00000610788 101 ntBASIC2.5□□□□□ -2.01
NPAS1Q99742 Y_RNA.784-201ENST00000613803 101 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms