Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MIR4715-201ENST00000584117 79 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 AL590240.4-201ENST00000616908 390 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AL391987.6-201ENST00000305671 199 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP447-201ENST00000363749 119 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU6-743P-201ENST00000364151 106 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 SNORA25B-201ENST00000365507 128 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.446-201ENST00000384178 104 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU6-975P-201ENST00000384296 105 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU6-102P-201ENST00000384485 104 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.541-201ENST00000384640 113 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 MIR199A2-201ENST00000385289 110 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU7-57P-201ENST00000459540 60 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AC010618.1-201ENST00000469924 477 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU6-1338P-201ENST00000516328 91 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU6-155P-201ENST00000516347 100 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNU6-948P-201ENST00000516374 107 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP49-201ENST00000516450 115 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AP002001.1-203ENST00000534002 267 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AC055872.1-201ENST00000570978 278 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 MIR5096-201ENST00000583713 70 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AP001282.2-201ENST00000616149 309 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AP000346.3-201ENST00000622821 210 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 AC073476.4-201ENST00000628409 72 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 IGHVIII-44-202ENST00000636235 289 ntBASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CLRN3Q8NCR9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC092593.1-201ENST00000515413 1815 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.101-201ENST00000363154 102 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.350-201ENST00000365409 98 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 MIR1185-2-201ENST00000408687 86 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 RNU2-48P-201ENST00000410694 191 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 ELOCP19-201ENST00000411919 318 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC009963.1-201ENST00000417265 157 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC139712.2-201ENST00000424302 339 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 RPS29P17-201ENST00000430795 166 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 POLR2KP2-201ENST00000438155 177 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 SUMO1P2-201ENST00000452524 304 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 RPL39P38-201ENST00000467018 153 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 RN7SL860P-201ENST00000473738 223 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 HMGB3P17-201ENST00000504195 649 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC107222.1-201ENST00000510899 637 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 IGLVIV-65-201ENST00000517313 360 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC110588.1-201ENST00000559699 137 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 MIR3671-201ENST00000580455 88 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 SDR42E1P4-201ENST00000620894 481 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 snoZ196.1-201ENST00000625269 89 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AL034408.1-202ENST00000636088 415 ntBASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
CLRN3Q8NCR9 AC073346.2-201ENST00000624724 2058 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.14-201ENST00000362415 103 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 RNU6-326P-201ENST00000365480 107 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.489-201ENST00000384410 101 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.569-201ENST00000384749 103 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 MIR548H3-201ENST00000408771 118 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 RN7SKP156-201ENST00000410308 342 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 RNU2-38P-201ENST00000410856 79 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 SRIP3-201ENST00000413200 219 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 CENPBD1P1-201ENST00000464061 469 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 AC018868.1-201ENST00000491307 315 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 RN7SL691P-201ENST00000494487 301 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 AC093259.1-201ENST00000509755 300 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 RNU6-1271P-201ENST00000517049 105 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 DEFB108E-201ENST00000524692 240 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 AC008749.1-201ENST00000597650 306 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 MIR7151-201ENST00000617477 60 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 MIR7641-1-201ENST00000627518 61 ntBASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CLRN3Q8NCR9 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 MTND5P6-201ENST00000422338 1798 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.237-201ENST00000364439 102 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.286-201ENST00000364813 102 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 Y_RNA.332-201ENST00000365271 113 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 RNU6-1235P-201ENST00000384559 107 ntBASIC2.83□□□□□ -1.96
CLRN3Q8NCR9 MIR592-201ENST00000384959 97 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms