Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-1219P-201ENST00000516143 112 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.26□□□□□ -1.89
USP39Q53GS9 AC008749.1-201ENST00000597650 306 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 AP001485.1-201ENST00000604799 199 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 SNORA43.4-201ENST00000629559 138 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.26□□□□□ -1.89
USP39Q53GS9 MIR7153-201ENST00000637758 57 ntBASIC3.26□□□□□ -1.89
USP39Q53GS9 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USP39Q53GS9 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USP39Q53GS9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP39Q53GS9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.25□□□□□ -1.89
USP39Q53GS9 MIR410-201ENST00000362222 80 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 Y_RNA.136-201ENST00000363444 102 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 SNORD32A-201ENST00000364805 84 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 RNU6-21P-201ENST00000384710 107 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 MIR487A-201ENST00000385009 80 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 MIR329-1-201ENST00000385028 80 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 RNU6-1001P-201ENST00000411265 100 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 WARS2P1-201ENST00000429678 537 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 AC107083.1-201ENST00000439643 279 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 MRPS10P1-201ENST00000448483 130 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 HMGN1P18-201ENST00000457642 277 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 RN7SL442P-201ENST00000473804 320 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 AC117440.1-201ENST00000474107 571 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.25□□□□□ -1.89
USP39Q53GS9 UBL5P4-201ENST00000562584 236 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.25□□□□□ -1.89
USP39Q53GS9 IGHVIII-44-202ENST00000636235 289 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 AL035425.3-201ENST00000564206 4996 ntBASIC3.25□□□□□ -1.89
USP39Q53GS9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP39Q53GS9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.24□□□□□ -1.89
USP39Q53GS9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP39Q53GS9 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.24□□□□□ -1.89
USP39Q53GS9 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP39Q53GS9 RNU6-527P-201ENST00000363425 104 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP39Q53GS9 Y_RNA.441-201ENST00000384123 112 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 RNU6-1145P-201ENST00000384246 107 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 EIF1AXP1-201ENST00000419267 435 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 RPL23AP95-201ENST00000426806 265 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 AL353705.1-201ENST00000433468 480 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 Z82210.1-201ENST00000440037 231 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 UQCRBP2-201ENST00000447827 297 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.24□□□□□ -1.89
USP39Q53GS9 RPL23AP3-201ENST00000453844 468 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC3.24□□□□□ -1.89
USP39Q53GS9 AL391261.3-201ENST00000557194 520 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.24□□□□□ -1.89
USP39Q53GS9 AC108706.1-201ENST00000611053 297 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 uc_338.1-201ENST00000612113 180 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 AC005296.1-201ENST00000616145 209 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 U6.99-201ENST00000637524 83 ntBASIC3.24□□□□□ -1.89
USP39Q53GS9 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.24□□□□□ -1.89
USP39Q53GS9 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
USP39Q53GS9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP39Q53GS9 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
USP39Q53GS9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
USP39Q53GS9 SNORD50B-201ENST00000364995 70 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 Y_RNA.304-201ENST00000365011 112 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 Y_RNA.308-201ENST00000365043 101 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 RNU6-1175P-201ENST00000365200 107 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 RNU6-1035P-201ENST00000384477 107 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 MIR1290-201ENST00000408735 78 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 RNU5E-9P-201ENST00000411164 104 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AC009487.2-201ENST00000420969 6821 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AC092047.1-201ENST00000424997 240 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AC009237.7-201ENST00000447357 229 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.23□□□□□ -1.89
USP39Q53GS9 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 SNORA40.9-201ENST00000515895 93 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 RNU6-1183P-201ENST00000517054 60 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC104027.1-201ENST00000521887 300 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC004832.5-201ENST00000608677 401 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AP002826.1-201ENST00000608835 315 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC073349.3-201ENST00000617616 186 ntBASIC3.23□□□□□ -1.89
USP39Q53GS9 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.23□□□□□ -1.89
USP39Q53GS9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
USP39Q53GS9 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
USP39Q53GS9 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
USP39Q53GS9 AC091564.4-201ENST00000533934 2194 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
USP39Q53GS9 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.22□□□□□ -1.89
USP39Q53GS9 GABRG2-229ENST00000641017 3628 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RNU6-799P-201ENST00000363567 107 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 Y_RNA.217-201ENST00000364214 105 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 Y_RNA.230-201ENST00000364348 109 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 Y_RNA.319-201ENST00000365138 92 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 CD24P4-201ENST00000382840 243 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RNU6-1027P-201ENST00000383998 107 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RNU6-514P-201ENST00000384208 107 ntBASIC3.22□□□□□ -1.89
USP39Q53GS9 RNU6-159P-201ENST00000391080 106 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms