Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
NCBP3Q53F19 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
NCBP3Q53F19 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
NCBP3Q53F19 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
NCBP3Q53F19 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC6.61□□□□□ -1.35
NCBP3Q53F19 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 MIR342-201ENST00000362212 99 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 RNU1-106P-201ENST00000384382 164 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 RNA5SP113-201ENST00000410486 84 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 RPL34P20-201ENST00000442771 351 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC6.61□□□□□ -1.35
NCBP3Q53F19 AC008953.1-201ENST00000497334 318 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 RNU6ATAC13P-201ENST00000516152 131 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC6.61□□□□□ -1.35
NCBP3Q53F19 AP003484.1-201ENST00000530974 250 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 AC002984.1-201ENST00000591692 448 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 MIR1248-201ENST00000629190 106 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.61□□□□□ -1.35
NCBP3Q53F19 AC095038.3-201ENST00000634439 195 ntBASIC6.61□□□□□ -1.35
NCBP3Q53F19 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.61□□□□□ -1.35
NCBP3Q53F19 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
NCBP3Q53F19 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC6.6□□□□□ -1.35
NCBP3Q53F19 AC008264.2-201ENST00000610193 3731 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 Y_RNA.191-201ENST00000363972 113 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 AC114755.2-201ENST00000413520 361 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 AL139247.1-201ENST00000422768 325 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 SNX2P2-201ENST00000424553 323 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 RPEP3-201ENST00000425462 676 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 AL512326.2-201ENST00000426359 151 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.6□□□□□ -1.35
NCBP3Q53F19 MIR6079-201ENST00000635807 62 ntBASIC6.6□□□□□ -1.35
NCBP3Q53F19 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
NCBP3Q53F19 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
NCBP3Q53F19 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
NCBP3Q53F19 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
NCBP3Q53F19 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
NCBP3Q53F19 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
NCBP3Q53F19 SNORD14E-201ENST00000364009 85 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 SNORD113.2-201ENST00000364166 89 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 RN7SKP200-201ENST00000410564 320 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 AC244505.4-201ENST00000434905 287 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 AL353813.1-201ENST00000440700 253 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 SSXP5-201ENST00000443473 287 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 RN7SL97P-201ENST00000486780 299 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 RN7SL244P-201ENST00000493405 297 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 RNU6-341P-201ENST00000516973 96 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 IGHVII-40-1-201ENST00000517316 58 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 AC004812.1-201ENST00000540773 146 ntBASIC6.59□□□□□ -1.35
NCBP3Q53F19 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
NCBP3Q53F19 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
NCBP3Q53F19 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
NCBP3Q53F19 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.58□□□□□ -1.36
NCBP3Q53F19 RNU6-743P-201ENST00000364151 106 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 RNA5SP428-201ENST00000365129 132 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
NCBP3Q53F19 RNU6-679P-201ENST00000391003 106 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 RPL23AP63-201ENST00000498752 471 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC6.58□□□□□ -1.36
NCBP3Q53F19 ENPP7P9-201ENST00000514456 627 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 RNU6-586P-201ENST00000517265 104 ntBASIC6.58□□□□□ -1.36
NCBP3Q53F19 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.58□□□□□ -1.36
NCBP3Q53F19 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC6.58□□□□□ -1.36
NCBP3Q53F19 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
NCBP3Q53F19 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NCBP3Q53F19 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
NCBP3Q53F19 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
NCBP3Q53F19 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC6.57□□□□□ -1.36
NCBP3Q53F19 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC6.57□□□□□ -1.36
NCBP3Q53F19 RNU6-268P-201ENST00000364174 107 ntBASIC6.57□□□□□ -1.36
NCBP3Q53F19 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NCBP3Q53F19 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC6.57□□□□□ -1.36
NCBP3Q53F19 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.57□□□□□ -1.36
NCBP3Q53F19 RN7SL826P-201ENST00000479724 288 ntBASIC6.57□□□□□ -1.36
NCBP3Q53F19 VWA8P1-201ENST00000510889 176 ntBASIC6.57□□□□□ -1.36
NCBP3Q53F19 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC6.57□□□□□ -1.36
NCBP3Q53F19 MIR4691-201ENST00000583764 85 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms