Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SNORA12-201ENST00000391162 147 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 EIF1P2-201ENST00000428233 350 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AC027124.2-201ENST00000428249 105 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 RN7SKP132-201ENST00000516001 208 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 SNORA25.14-201ENST00000516481 132 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 CYCSP23-201ENST00000519781 313 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AC022616.8-201ENST00000533569 253 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AL132822.1-201ENST00000617063 513 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 AC007742.2-201ENST00000618226 398 ntBASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
CCDC144BQ3MJ40 RNU1-62P-201ENST00000362599 164 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RNA5SP125-201ENST00000364843 120 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RNU6-639P-201ENST00000384074 107 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RPL21P75-201ENST00000396599 483 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RPL21P28-201ENST00000401418 483 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 MRPL42P3-201ENST00000401492 326 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RN7SKP58-201ENST00000411010 305 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RNU2-32P-201ENST00000411193 191 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RPL21P39-201ENST00000463605 483 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RN7SL429P-201ENST00000479090 223 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC087190.1-201ENST00000484462 480 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC107032.1-201ENST00000485945 480 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RN7SL489P-201ENST00000486185 223 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RN7SL327P-201ENST00000488659 223 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC093591.1-201ENST00000491435 481 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RPS23P5-201ENST00000495419 428 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RPL21P16-201ENST00000495531 483 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC093852.1-201ENST00000503587 266 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RPPH1-2P-201ENST00000516688 293 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 Y_RNA.721-201ENST00000517207 102 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC022868.1-201ENST00000517767 391 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AL442163.3-201ENST00000554110 156 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 MIR5695-201ENST00000579717 85 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 MIR3162-201ENST00000581818 82 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC006504.6-201ENST00000590142 199 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 AC023043.3-201ENST00000593113 385 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 RN7SL853P-201ENST00000617250 223 ntBASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
CCDC144BQ3MJ40 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 RNU6-873P-201ENST00000363833 107 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 Y_RNA.424-201ENST00000384063 103 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 SNORA18.3-201ENST00000384122 132 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 RNU6-281P-201ENST00000384212 103 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 RNU6-301P-201ENST00000384277 107 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 MIR487A-201ENST00000385009 80 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 AL590004.2-201ENST00000404787 371 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 RNA5SP492-201ENST00000411330 114 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 AC105272.1-201ENST00000438604 198 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 RNU2-44P-201ENST00000516795 194 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 UBL5P4-201ENST00000562584 236 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 MIR6733-201ENST00000635723 61 ntBASIC3.39□□□□□ -1.87
CCDC144BQ3MJ40 AC135776.4-201ENST00000624300 1904 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC073325.2-201ENST00000339545 159 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 Y_RNA.158-201ENST00000363651 101 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 RNU6-879P-201ENST00000364328 108 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 RNA5SP126-201ENST00000365092 109 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 SNORA18.2-201ENST00000383865 132 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 RNA5SP213-201ENST00000391031 106 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AL139281.1-201ENST00000422120 335 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC096644.2-201ENST00000429278 159 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 ARL5AP4-201ENST00000430731 512 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC004386.2-201ENST00000441858 148 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 SCGB1D5P-201ENST00000515134 247 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 RNU5F-4P-201ENST00000516581 114 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC007536.1-201ENST00000533382 349 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 HSPE1P20-201ENST00000538133 289 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC093023.1-201ENST00000547375 507 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 MIR5006-201ENST00000583027 110 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC078899.3-201ENST00000599065 212 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 RPS29P30-201ENST00000600975 111 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 AC010999.1-201ENST00000611856 324 ntBASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC144BQ3MJ40 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 Y_RNA.27-201ENST00000362540 103 ntBASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 RNU1-76P-201ENST00000362903 159 ntBASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 Y_RNA.179-201ENST00000363844 90 ntBASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 RNY3P11-201ENST00000364153 102 ntBASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 Y_RNA.216-201ENST00000364205 93 ntBASIC3.37□□□□□ -1.87
CCDC144BQ3MJ40 RNU6-234P-201ENST00000365229 104 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms