Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC253576.2-201ENST00000618815 580 ntBASIC-0□□□□□ -2.41
CHD9Q3L8U1 AL513423.1-201ENST00000621695 132 ntBASIC-0□□□□□ -2.41
CHD9Q3L8U1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 RNU6-481P-201ENST00000384194 107 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 Y_RNA.534-201ENST00000384599 112 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AL590084.2-201ENST00000401481 382 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 RNU6-914P-201ENST00000516749 109 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC012414.2-201ENST00000559474 187 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC022432.1-201ENST00000595739 310 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AL592221.1-201ENST00000605266 382 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 PCMTD1P7-201ENST00000634506 357 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 RNU6-78P-201ENST00000362897 107 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC123900.1-201ENST00000420390 96 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 MTCO3P29-201ENST00000432119 779 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 TPTE2P1-204ENST00000435256 593 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AL008629.1-201ENST00000438615 184 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC245047.8-201ENST00000456455 284 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC090049.2-201ENST00000550377 109 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC021231.3-201ENST00000558497 370 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 Z98751.3-201ENST00000604447 521 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 AC017083.3-201ENST00000609955 700 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 SNORD3E-202ENST00000627253 216 ntBASIC-0.01□□□□□ -2.41
CHD9Q3L8U1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 RNU6-289P-201ENST00000364093 107 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MIR217-201ENST00000384817 110 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MTND4P20-201ENST00000424125 869 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 DPRXP1-201ENST00000426312 460 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 PCNPP5-201ENST00000452246 481 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 ART2BP-201ENST00000453501 499 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 snoU13.25-201ENST00000458945 104 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 RNU6-947P-201ENST00000516264 106 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AP000676.3-201ENST00000623299 569 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 RNU6-1141P-201ENST00000364520 107 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MIR1285-2-201ENST00000408311 88 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 RNU6-293P-201ENST00000411259 106 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MTCYBP5-201ENST00000423752 1135 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AC093899.1-201ENST00000457984 376 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AC023632.1-201ENST00000518463 375 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MTND1P36-201ENST00000522384 936 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AC078795.3-201ENST00000602913 472 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 AC091304.9-201ENST00000612091 226 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MIR8064-201ENST00000612863 90 ntBASIC-0.02□□□□□ -2.41
CHD9Q3L8U1 MIRLET7D-201ENST00000362263 87 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 SNORD114-5-201ENST00000362928 70 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 RNU6-777P-201ENST00000364265 104 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 SNORD113.3-201ENST00000364630 78 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 SNORD105-201ENST00000386910 85 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC013262.1-201ENST00000426710 252 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 GTF2IP3-201ENST00000433887 494 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 SNRPEP8-201ENST00000442866 260 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 SNORD57-201ENST00000448188 72 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC110760.3-201ENST00000598794 467 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL353778.1-201ENST00000603149 408 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL445435.1-201ENST00000604232 665 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC231657.1-201ENST00000624313 397 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 MIR412-201ENST00000362142 91 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 MIR18A-201ENST00000362310 71 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 RNU6-1122P-201ENST00000384449 107 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL079342.2-201ENST00000403367 482 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 FCF1P10-201ENST00000407590 479 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL034345.1-201ENST00000407768 123 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 RNA5SP451-201ENST00000410588 110 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL669831.1-202ENST00000428504 417 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 HMGN2P26-201ENST00000463169 339 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC104982.1-201ENST00000478775 574 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 HMGB1P29-201ENST00000505659 499 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC091163.3-201ENST00000518269 1144 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AC004584.2-201ENST00000570407 410 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 AL022154.1-201ENST00000604698 785 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 RNU6-94P-201ENST00000607728 107 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 MTND5P33-201ENST00000571250 1450 ntBASIC-0.03□□□□□ -2.41
CHD9Q3L8U1 SNORA32.1-201ENST00000364514 115 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 RNU6-843P-201ENST00000384454 104 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MIR660-201ENST00000385235 97 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 RPS20P2-201ENST00000402520 389 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MTND4P19-201ENST00000446659 478 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms