Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.94□□□□□ -1.78
MSX1P28360 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.94□□□□□ -1.78
MSX1P28360 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSX1P28360 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSX1P28360 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.94□□□□□ -1.78
MSX1P28360 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSX1P28360 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX1P28360 AC010889.1-201ENST00000566193 2666 ntBASIC3.94□□□□□ -1.78
MSX1P28360 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
MSX1P28360 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.94□□□□□ -1.78
MSX1P28360 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX1P28360 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX1P28360 MIR383-201ENST00000362257 73 ntBASIC3.93□□□□□ -1.78
MSX1P28360 Y_RNA.346-201ENST00000365385 112 ntBASIC3.93□□□□□ -1.78
MSX1P28360 AL139095.1-201ENST00000404326 391 ntBASIC3.93□□□□□ -1.78
MSX1P28360 MIR1302-4-201ENST00000408701 150 ntBASIC3.93□□□□□ -1.78
MSX1P28360 MIR1183-201ENST00000408856 89 ntBASIC3.93□□□□□ -1.78
MSX1P28360 RNU2-49P-201ENST00000410666 184 ntBASIC3.93□□□□□ -1.78
MSX1P28360 RBMY2UP-201ENST00000453474 324 ntBASIC3.93□□□□□ -1.78
MSX1P28360 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX1P28360 Y_RNA.649-201ENST00000459077 103 ntBASIC3.93□□□□□ -1.78
MSX1P28360 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.93□□□□□ -1.78
MSX1P28360 RN7SKP19-201ENST00000516016 252 ntBASIC3.93□□□□□ -1.78
MSX1P28360 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.93□□□□□ -1.78
MSX1P28360 AL049861.1-201ENST00000603130 150 ntBASIC3.93□□□□□ -1.78
MSX1P28360 RNU1-30P-201ENST00000606575 163 ntBASIC3.93□□□□□ -1.78
MSX1P28360 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.93□□□□□ -1.78
MSX1P28360 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.93□□□□□ -1.78
MSX1P28360 AC039056.2-201ENST00000622261 511 ntBASIC3.93□□□□□ -1.78
MSX1P28360 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX1P28360 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX1P28360 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSX1P28360 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.93□□□□□ -1.78
MSX1P28360 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
MSX1P28360 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
MSX1P28360 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSX1P28360 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.92□□□□□ -1.78
MSX1P28360 RNU1-132P-201ENST00000364300 164 ntBASIC3.92□□□□□ -1.78
MSX1P28360 DYNLT3P1-201ENST00000378574 347 ntBASIC3.92□□□□□ -1.78
MSX1P28360 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
MSX1P28360 SNORD66.1-201ENST00000391230 76 ntBASIC3.92□□□□□ -1.78
MSX1P28360 RN7SKP177-201ENST00000410567 355 ntBASIC3.92□□□□□ -1.78
MSX1P28360 RNA5SP104-201ENST00000410989 118 ntBASIC3.92□□□□□ -1.78
MSX1P28360 AL157831.1-201ENST00000426134 473 ntBASIC3.92□□□□□ -1.78
MSX1P28360 RNU6-781P-201ENST00000516377 101 ntBASIC3.92□□□□□ -1.78
MSX1P28360 RNA5SP153-201ENST00000516498 76 ntBASIC3.92□□□□□ -1.78
MSX1P28360 RNU2-60P-201ENST00000517290 128 ntBASIC3.92□□□□□ -1.78
MSX1P28360 AC006064.5-201ENST00000541782 248 ntBASIC3.92□□□□□ -1.78
MSX1P28360 MIR4429-201ENST00000580105 73 ntBASIC3.92□□□□□ -1.78
MSX1P28360 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSX1P28360 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
MSX1P28360 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSX1P28360 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
MSX1P28360 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.92□□□□□ -1.78
MSX1P28360 AC000403.1-201ENST00000613696 3585 ntBASIC3.92□□□□□ -1.78
MSX1P28360 AL672296.1-201ENST00000427780 2158 ntBASIC3.92□□□□□ -1.78
MSX1P28360 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSX1P28360 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 AL356292.1-201ENST00000283110 373 ntBASIC3.91□□□□□ -1.78
MSX1P28360 SPRR2C-201ENST00000290702 219 ntBASIC3.91□□□□□ -1.78
MSX1P28360 MIR548A1-201ENST00000385041 97 ntBASIC3.91□□□□□ -1.78
MSX1P28360 MIRLET7F2-201ENST00000385277 83 ntBASIC3.91□□□□□ -1.78
MSX1P28360 RNU6-628P-201ENST00000410675 107 ntBASIC3.91□□□□□ -1.78
MSX1P28360 RN7SKP284-201ENST00000411002 343 ntBASIC3.91□□□□□ -1.78
MSX1P28360 RN7SKP167-201ENST00000411047 285 ntBASIC3.91□□□□□ -1.78
MSX1P28360 AC126124.2-201ENST00000413542 321 ntBASIC3.91□□□□□ -1.78
MSX1P28360 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.91□□□□□ -1.78
MSX1P28360 RPL23AP52-201ENST00000439311 478 ntBASIC3.91□□□□□ -1.78
MSX1P28360 SNRPGP5-201ENST00000456003 220 ntBASIC3.91□□□□□ -1.78
MSX1P28360 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.91□□□□□ -1.78
MSX1P28360 RPS26P28-201ENST00000470806 348 ntBASIC3.91□□□□□ -1.78
MSX1P28360 AC025445.1-201ENST00000502728 300 ntBASIC3.91□□□□□ -1.78
MSX1P28360 AC010598.1-201ENST00000510378 103 ntBASIC3.91□□□□□ -1.78
MSX1P28360 RNU1-61P-201ENST00000516107 151 ntBASIC3.91□□□□□ -1.78
MSX1P28360 Y_RNA.677-201ENST00000516401 85 ntBASIC3.91□□□□□ -1.78
MSX1P28360 RMST_8.1-201ENST00000610287 165 ntBASIC3.91□□□□□ -1.78
MSX1P28360 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.91□□□□□ -1.78
MSX1P28360 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
MSX1P28360 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSX1P28360 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSX1P28360 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSX1P28360 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.91□□□□□ -1.78
MSX1P28360 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
MSX1P28360 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.91□□□□□ -1.78
MSX1P28360 AC018555.1-201ENST00000567548 1980 ntBASIC3.91□□□□□ -1.78
MSX1P28360 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.78
MSX1P28360 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.9□□□□□ -1.78
MSX1P28360 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.9□□□□□ -1.78
MSX1P28360 RNU1-14P-201ENST00000362759 152 ntBASIC3.9□□□□□ -1.79
MSX1P28360 RNU6-309P-201ENST00000364573 106 ntBASIC3.9□□□□□ -1.79
MSX1P28360 U6atac.2-201ENST00000408644 118 ntBASIC3.9□□□□□ -1.79
MSX1P28360 MIR1179-201ENST00000408703 91 ntBASIC3.9□□□□□ -1.79
MSX1P28360 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.9□□□□□ -1.79
MSX1P28360 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 173 ms