Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 RNU5B-2P-201ENST00000363036 113 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 Y_RNA.277-201ENST00000364754 102 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
HLA-DOAP06340 Y_RNA.416-201ENST00000384014 113 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 U8.10-201ENST00000384260 133 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HLA-DOAP06340 AL603910.2-201ENST00000407268 136 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 MIR548I3-201ENST00000408378 149 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 MIR548I1-201ENST00000408810 149 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RNU6-1245P-201ENST00000411130 106 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.12□□□□□ -1.91
HLA-DOAP06340 RPL23AP95-201ENST00000426806 265 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RPS15AP5-201ENST00000436276 388 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 MTND2P29-201ENST00000438595 412 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AL161651.1-201ENST00000440882 223 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC124916.1-201ENST00000444020 547 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC016700.2-201ENST00000446011 156 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AP000705.1-201ENST00000454567 350 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RN7SL330P-201ENST00000469709 307 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RPL30P12-201ENST00000474666 353 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 MED28P2-201ENST00000475771 317 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RN7SL429P-201ENST00000479090 223 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RN7SL489P-201ENST00000486185 223 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RN7SL327P-201ENST00000488659 223 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 HSPE1P4-201ENST00000550617 308 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC027288.2-201ENST00000553028 243 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC009163.5-201ENST00000575421 637 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC019159.1-201ENST00000605094 187 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 RN7SL853P-201ENST00000617250 223 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 AC024581.2-201ENST00000619986 252 ntBASIC3.12□□□□□ -1.91
HLA-DOAP06340 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DOAP06340 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HLA-DOAP06340 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.12□□□□□ -1.91
HLA-DOAP06340 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DOAP06340 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.11□□□□□ -1.91
HLA-DOAP06340 LINC02555-201ENST00000563933 1951 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DOAP06340 Y_RNA.54-201ENST00000362766 105 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 Y_RNA.65-201ENST00000362846 100 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 SNORD113-8-201ENST00000363497 74 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 RNU6-843P-201ENST00000384454 104 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 RNU2-64P-201ENST00000411315 191 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 AL590135.1-201ENST00000422215 156 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 WARS2P1-201ENST00000429678 537 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 SUMO1P3-201ENST00000439961 304 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 SUMO1P2-201ENST00000452524 304 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 RNU6-1338P-201ENST00000516328 91 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DOAP06340 MIR4643-201ENST00000577473 78 ntBASIC3.11□□□□□ -1.91
HLA-DOAP06340 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.11□□□□□ -1.91
HLA-DOAP06340 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HLA-DOAP06340 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 AC002546.1-201ENST00000588041 2504 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 Y_RNA.20-201ENST00000362479 113 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 Y_RNA.286-201ENST00000364813 102 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 RNU6-209P-201ENST00000384118 107 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 MIR10B-201ENST00000385011 110 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 SNORD78.2-201ENST00000391076 69 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 RNA5SP508-201ENST00000411327 119 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 AL049830.2-201ENST00000480072 201 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 AC091144.1-201ENST00000519573 138 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 MIR5695-201ENST00000579717 85 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 Y_RNA.772-201ENST00000606692 102 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 RMST_6.1-201ENST00000611980 203 ntBASIC3.1□□□□□ -1.91
HLA-DOAP06340 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.1□□□□□ -1.91
HLA-DOAP06340 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HLA-DOAP06340 RBBP8P1-201ENST00000449447 1844 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.09□□□□□ -1.91
HLA-DOAP06340 SNORD115-32-201ENST00000364079 82 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 Y_RNA.462-201ENST00000384268 102 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 MRPL35P1-201ENST00000404272 572 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 RNU4-30P-201ENST00000410245 143 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 RNU6-1001P-201ENST00000411265 100 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.09□□□□□ -1.91
HLA-DOAP06340 AC096920.1-201ENST00000423991 241 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 AC004383.1-201ENST00000438135 289 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 RPS15AP7-201ENST00000439294 405 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 GPM6BP3-201ENST00000442797 145 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 CEACAMP4-201ENST00000457676 421 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 GZMAP1-201ENST00000503054 631 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 AL078605.1-201ENST00000603529 500 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 AL365434.2-201ENST00000607979 234 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 AL138880.2-201ENST00000616214 239 ntBASIC3.09□□□□□ -1.91
HLA-DOAP06340 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
HLA-DOAP06340 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
HLA-DOAP06340 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.09□□□□□ -1.92
HLA-DOAP06340 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HLA-DOAP06340 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HLA-DOAP06340 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HLA-DOAP06340 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 123.5 ms