Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 MIR5685-201ENST00000579080 79 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AC010680.1-201ENST00000590024 3590 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AL020997.2-201ENST00000602607 184 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 RNU1-30P-201ENST00000606575 163 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AC110774.1-201ENST00000623567 2018 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 AC027290.2-201ENST00000623210 18662 ntBASIC4.08□□□□□ -1.76
USP3Q9Y6I4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
USP3Q9Y6I4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RNA5SP502-201ENST00000362694 119 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RNU6-1180P-201ENST00000364935 107 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RNU6-768P-201ENST00000384683 107 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 MIR548B-201ENST00000385247 97 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 MIR873-201ENST00000401120 77 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 AC004552.1-201ENST00000419089 348 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 HMGN2P20-201ENST00000437531 273 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RPL23AP62-201ENST00000463396 453 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RPS26P3-201ENST00000470205 348 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 AC090543.2-201ENST00000483963 348 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 AC004057.1-201ENST00000485827 348 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RPL36AP21-201ENST00000490372 323 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 RNU7-115P-201ENST00000516433 55 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 uc_338.14-201ENST00000613162 166 ntBASIC4.07□□□□□ -1.76
USP3Q9Y6I4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.07□□□□□ -1.76
USP3Q9Y6I4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 RNU6-271P-201ENST00000363858 105 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 RNU6-597P-201ENST00000365620 102 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 MIR30B-201ENST00000384850 88 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 RAC1P5-201ENST00000512182 576 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 RNU7-116P-201ENST00000516940 62 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AC006130.2-201ENST00000586202 326 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AL137843.1-201ENST00000605078 385 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 AC012640.5-201ENST00000623897 319 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 IPO8P1-201ENST00000455509 3109 ntBASIC4.06□□□□□ -1.76
USP3Q9Y6I4 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
USP3Q9Y6I4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 AC018555.1-201ENST00000567548 1980 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 RNU6-198P-201ENST00000384258 104 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 MIR134-201ENST00000385258 73 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 MT-TT-201ENST00000387460 66 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 RNU6-460P-201ENST00000391158 108 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 HSPE1P26-201ENST00000405341 275 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 MIR1185-2-201ENST00000408687 86 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 RNU2-49P-201ENST00000410666 184 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 RPL23AP7-203ENST00000449021 469 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 CENPBD1P1-201ENST00000464061 469 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 AC146944.2-203ENST00000502493 354 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 FCF1P8-201ENST00000510322 597 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 AC139495.1-202ENST00000513164 354 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 RNU2-56P-201ENST00000516826 190 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 Y_RNA.712-201ENST00000517011 92 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 HSPE1P18-201ENST00000517602 280 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 AC079598.5-201ENST00000547460 117 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 MIR4727-201ENST00000622232 55 ntBASIC4.05□□□□□ -1.76
USP3Q9Y6I4 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
USP3Q9Y6I4 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP3Q9Y6I4 RNU6-1305P-201ENST00000364353 104 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 Y_RNA.251-201ENST00000364551 99 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 RNU6-1323P-201ENST00000384025 107 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 RNU6-476P-201ENST00000384726 107 ntBASIC4.04□□□□□ -1.76
USP3Q9Y6I4 MIR518C-201ENST00000384822 101 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms