Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RNU6-1336P-201ENST00000383886 109 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-147P-201ENST00000383983 107 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 MIR147B-201ENST00000390185 80 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AP000567.1-201ENST00000406413 156 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNU2-49P-201ENST00000410666 184 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.622-201ENST00000411091 108 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 HSPE1P21-201ENST00000438283 308 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AC006011.1-201ENST00000442758 349 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AL162151.2-201ENST00000448875 158 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 HSPE1P13-201ENST00000451143 297 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RN7SL132P-201ENST00000478131 296 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RPL29P14-201ENST00000495837 428 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-772P-201ENST00000516042 105 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-589P-201ENST00000516485 107 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.712-201ENST00000517011 92 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AC069200.1-201ENST00000609511 323 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AL138880.2-201ENST00000616214 239 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 MIR7151-201ENST00000617477 60 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 MIR4727-201ENST00000622232 55 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 U6.115-201ENST00000636045 103 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AC010889.1-201ENST00000566193 2666 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AC007496.3-201ENST00000624987 3443 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 UBE3AP2-201ENST00000429033 2259 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 RNU4-15P-201ENST00000362613 141 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP295-201ENST00000362655 121 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 U3.9-201ENST00000363823 204 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-198P-201ENST00000384258 104 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 SNORA48.5-201ENST00000391143 135 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 SNORA75.5-201ENST00000391291 81 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP39-201ENST00000411245 120 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 RPL31P61-201ENST00000496160 376 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AP000867.2-201ENST00000532468 320 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 MIR5684-201ENST00000585074 65 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AC006254.2-201ENST00000603259 279 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AC108081.1-201ENST00000604358 221 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AL137843.1-201ENST00000605078 385 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 AC012640.5-201ENST00000623897 319 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 MAPK10-373ENST00000641983 6772 ntBASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HIF3AQ9Y2N7 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 SNORA60-201ENST00000362396 134 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-755P-201ENST00000364400 103 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP267-201ENST00000364893 126 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 TOMM22P2-201ENST00000430735 237 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 HMGN2P20-201ENST00000437531 273 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC105137.1-201ENST00000484355 562 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC117454.1-201ENST00000491120 168 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC090142.3-201ENST00000519012 385 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC025754.2-201ENST00000606491 432 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC099778.2-201ENST00000610904 211 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC012531.5-201ENST00000611375 151 ntBASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HIF3AQ9Y2N7 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 MIR383-201ENST00000362257 73 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-750P-201ENST00000390946 107 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP89-201ENST00000410300 108 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 RPS3P1-201ENST00000456781 192 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC091167.1-201ENST00000492017 396 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 RN7SL604P-201ENST00000492589 296 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC120024.3-201ENST00000603167 156 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC114781.5-201ENST00000615297 108 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 MIR3653-201ENST00000625572 110 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 MIR3914-2-201ENST00000637339 95 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC068647.2-201ENST00000637380 353 ntBASIC3.66□□□□□ -1.82
HIF3AQ9Y2N7 AC010680.1-201ENST00000590024 3590 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms