Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-933P-201ENST00000384424 107 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AL512604.1-201ENST00000404812 257 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 U3.40-201ENST00000408706 208 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 RN7SKP284-201ENST00000411002 343 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 CBX3P6-201ENST00000430257 527 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC010095.1-201ENST00000443543 144 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 RPL23AP7-203ENST00000449021 469 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC114801.2-201ENST00000503825 781 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC018710.1-201ENST00000506509 158 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC005741.1-201ENST00000511094 432 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 MRPS36P4-201ENST00000534436 298 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 MIR3923-201ENST00000579521 83 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 AC093913.1-201ENST00000614178 329 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
CPSF3Q9UKF6 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.06
CPSF3Q9UKF6 RNU4-56P-201ENST00000364700 142 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 EIF1AXP1-201ENST00000419267 435 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 AL137159.1-201ENST00000452808 512 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 RNU6-329P-201ENST00000459618 107 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 MIR449C-201ENST00000516047 92 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 AP005639.2-201ENST00000527592 928 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 CYP4A27P-201ENST00000567218 190 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 PCGEM1.1-201ENST00000613431 131 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 MIR1248-201ENST00000629190 106 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 AP006437.1-201ENST00000641440 3685 ntBASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.15□□□□□ -2.07
CPSF3Q9UKF6 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNU5B-2P-201ENST00000363036 113 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNU6-1286P-201ENST00000383871 107 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 SNORA29-201ENST00000384183 140 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNU6-611P-201ENST00000384276 104 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNU6-378P-201ENST00000384324 107 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNU6-790P-201ENST00000384479 105 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 MIR517A-201ENST00000385001 87 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC012306.1-201ENST00000423267 114 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 MTND4LP16-201ENST00000440828 295 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 PCMTD1P1-201ENST00000455560 355 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 snoU13.6-201ENST00000458785 104 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 snoU13.26-201ENST00000459452 105 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 YWHAEP4-201ENST00000505390 198 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 MIR514B-201ENST00000516774 80 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNU6-566P-201ENST00000516790 107 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 RNA5SP454-201ENST00000517231 127 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC016256.1-201ENST00000547971 354 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 MIR4742-201ENST00000581069 85 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 SNRPGP19-201ENST00000603826 189 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC009318.2-201ENST00000610917 651 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AC005520.5-201ENST00000613926 164 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 AL133216.2-202ENST00000634512 349 ntBASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CPSF3Q9UKF6 CASC19-280ENST00000642102 1351 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 SNORD50.1-201ENST00000362987 71 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 RNU6-743P-201ENST00000364151 106 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 RNU6-1013P-201ENST00000384180 107 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 RNU6-784P-201ENST00000384330 106 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 RNU6-306P-201ENST00000384617 107 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 MIR518A2-201ENST00000384966 87 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 MTCO3P46-201ENST00000425787 232 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 Z82205.1-201ENST00000428456 297 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 MTND1P17-201ENST00000448961 204 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 RNU6-567P-201ENST00000516746 107 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 AL627230.6-201ENST00000611129 280 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 AP000553.5-201ENST00000641933 54 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 AC009487.4-201ENST00000624969 3585 ntBASIC2.13□□□□□ -2.07
CPSF3Q9UKF6 RNU6-968P-201ENST00000384076 107 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 MIR29C-201ENST00000385231 88 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 MIR208B-201ENST00000401172 77 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 MIR1262-201ENST00000408276 93 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 MIR1294-201ENST00000408503 142 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 RNA5SP450-201ENST00000411206 102 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 HMGN2P3-201ENST00000433603 273 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 HMGN2P5-201ENST00000436882 273 ntBASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.12□□□□□ -2.07
CPSF3Q9UKF6 RBMX2P4-201ENST00000441256 376 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms