Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNU2-55P-201ENST00000411146 174 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 AC093578.1-201ENST00000415219 368 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 Z98742.2-201ENST00000431564 187 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 HMGN2P31-201ENST00000432430 273 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 AC245047.4-201ENST00000433189 144 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 RNU7-14P-201ENST00000459331 62 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 RNU6-437P-201ENST00000459408 95 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 RNU6-221P-201ENST00000459541 99 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 AL592156.1-201ENST00000508758 304 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 AL161756.2-201ENST00000604597 246 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 RNU6-674P-201ENST00000363831 107 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 SNORD45.3-201ENST00000363836 72 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 Y_RNA.251-201ENST00000364551 99 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 HMGN2P8-201ENST00000391458 268 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 AP000567.1-201ENST00000406413 156 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 PRSS3P4-201ENST00000453323 162 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 RPL23AP54-201ENST00000495129 419 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 RNA5SP73-201ENST00000516744 108 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 MIR378D2-201ENST00000580636 98 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 MIR4765-201ENST00000585007 77 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 AC006435.5-201ENST00000624486 112 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 AC090517.3-201ENST00000625170 141 ntBASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.42□□□□□ -1.7
LIMD1Q9UGP4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 RNA5SP295-201ENST00000362655 121 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 MIR7-3-201ENST00000384898 110 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 RNU6-1077P-201ENST00000410506 102 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 RN7SKP101-201ENST00000411376 320 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 AL135786.1-201ENST00000415892 214 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 TBCAP1-201ENST00000436520 327 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 RAC1P5-201ENST00000512182 576 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 Y_RNA.757-201ENST00000578934 114 ntBASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.41□□□□□ -1.7
LIMD1Q9UGP4 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.4□□□□□ -1.7
LIMD1Q9UGP4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.4□□□□□ -1.7
LIMD1Q9UGP4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
LIMD1Q9UGP4 AC016588.2-201ENST00000632484 3021 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 RNU6-915P-201ENST00000364943 103 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 RNU6-975P-201ENST00000384296 105 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 SNORD116-13-201ENST00000384408 92 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 Y_RNA.584-201ENST00000391090 114 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 SNORD65B-201ENST00000459126 73 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 AC091178.1-203ENST00000584586 279 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 AL121772.2-201ENST00000614331 297 ntBASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
LIMD1Q9UGP4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 RNU6-486P-201ENST00000363116 107 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 RNU6-1080P-201ENST00000383982 107 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 RNU6-1083P-201ENST00000384022 107 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 RNA5SP354-201ENST00000391247 136 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 MIR1278-201ENST00000408753 81 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 RNU6-1064P-201ENST00000410626 104 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 Y_RNA.622-201ENST00000411091 108 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.39□□□□□ -1.71
LIMD1Q9UGP4 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms