Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL109918.3-201ENST00000603072 338 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC005034.5-201ENST00000604219 466 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC025754.2-201ENST00000606491 432 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AL627230.6-201ENST00000611129 280 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AL773524.1-201ENST00000614065 229 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 AC024614.3-201ENST00000637860 256 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.79□□□□□ -2.12
LHX3Q9UBR4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
LHX3Q9UBR4 RNU6-254P-201ENST00000363377 107 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 Y_RNA.256-201ENST00000364594 104 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
LHX3Q9UBR4 RNU6-1215P-201ENST00000384441 102 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 RNU6-160P-201ENST00000384591 107 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 MIR208B-201ENST00000401172 77 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 UBE2V1P4-201ENST00000425374 344 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AL645568.3-201ENST00000433683 316 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.78□□□□□ -2.12
LHX3Q9UBR4 RPS29P27-201ENST00000463711 170 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC091435.1-201ENST00000505442 584 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC005741.1-201ENST00000511094 432 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 RNU6-250P-201ENST00000516958 103 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC016256.1-201ENST00000547971 354 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 ZNF519P2-201ENST00000557032 169 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 MIR4299-201ENST00000577899 72 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC100830.2-201ENST00000581636 240 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 CYP2C61P-201ENST00000604072 290 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC104458.1-201ENST00000608243 463 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 MIR8081-201ENST00000611533 95 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 RMST_3.1-201ENST00000611651 109 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AC005520.5-201ENST00000613926 164 ntBASIC1.78□□□□□ -2.12
LHX3Q9UBR4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.78□□□□□ -2.12
LHX3Q9UBR4 AL359851.1-201ENST00000569460 4997 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.9-201ENST00000362354 101 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 MIR597-201ENST00000384968 97 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 RNU6-325P-201ENST00000411132 105 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 RPL23AP6-201ENST00000446637 472 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 HMGN2P26-201ENST00000463169 339 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AC021146.2-201ENST00000504736 556 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 RNA5SP364-201ENST00000516938 78 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AC009994.1-201ENST00000606889 253 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 U1.36-201ENST00000620684 176 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AC130454.1-201ENST00000622948 401 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.77□□□□□ -2.13
LHX3Q9UBR4 AC233981.2-201ENST00000611524 1614 ntBASIC1.77□□□□□ -2.13
LHX3Q9UBR4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 RNY4P14-201ENST00000363656 96 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.332-201ENST00000365271 113 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 RNA5SP212-201ENST00000391223 107 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 AL627390.1-201ENST00000396055 340 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 RNU2-41P-201ENST00000410991 178 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 HMGN2P38-201ENST00000423806 265 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 HMGN2P23-201ENST00000456759 269 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 snoU13.23-201ENST00000458863 104 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 AC007547.1-201ENST00000462177 490 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 MRPS17P9-201ENST00000511924 393 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 AC026371.1-201ENST00000551867 419 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 RPL17P51-201ENST00000605218 238 ntBASIC1.76□□□□□ -2.13
LHX3Q9UBR4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
LHX3Q9UBR4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 RNU6-23P-201ENST00000363283 107 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.123-201ENST00000363338 102 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 RNU6-438P-201ENST00000365561 103 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.450-201ENST00000384198 113 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 SNORA8-201ENST00000384574 139 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 MIR521-1-201ENST00000384902 87 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 MIR548F1-201ENST00000408667 84 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AL030996.1-201ENST00000411430 235 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 MTCO1P21-201ENST00000416634 589 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AC123900.1-201ENST00000420390 96 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 HMGN2P19-201ENST00000425149 265 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 NDUFA5P4-201ENST00000436704 385 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 MTCO1P29-201ENST00000496868 288 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 RNU5F-4P-201ENST00000516581 114 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AC087441.2-201ENST00000529141 262 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AC090517.1-201ENST00000569307 266 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AC008749.1-201ENST00000597650 306 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 AL096840.1-201ENST00000603287 93 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.75□□□□□ -2.13
LHX3Q9UBR4 Y_RNA.89-201ENST00000363031 102 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms