Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AL645568.3-201ENST00000433683 316 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 MTND2P29-201ENST00000438595 412 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 HMGB1P18-201ENST00000438801 619 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 TRBVA-201ENST00000498804 316 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AC021146.2-201ENST00000504736 556 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNU6-548P-201ENST00000517083 115 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNA5SP490-201ENST00000517141 136 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AP005639.2-201ENST00000527592 928 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AL022345.1-201ENST00000607292 135 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AC024614.3-201ENST00000637860 256 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.84□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.100-201ENST00000363141 102 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 MIR208B-201ENST00000401172 77 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 VN1R36P-201ENST00000414936 291 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AL158823.1-201ENST00000418441 478 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 ZNF885P-201ENST00000420174 1098 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AC005741.1-201ENST00000511094 432 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.655-201ENST00000515919 96 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 MTND1P5-201ENST00000517906 940 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AC009994.1-201ENST00000606889 253 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.83□□□□□ -2.12
DDX28Q9NUL7 MIR8076-201ENST00000611401 83 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 AL353997.5-201ENST00000618886 171 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 MIR219B-201ENST00000637023 88 ntBASIC1.83□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.332-201ENST00000365271 113 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 SNORA29-201ENST00000384183 140 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.450-201ENST00000384198 113 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 RNU6-933P-201ENST00000384424 107 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.516-201ENST00000384541 124 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.573-201ENST00000384763 105 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 AL356432.1-201ENST00000405809 419 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 RN7SKP32-201ENST00000410167 303 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 RNU2-41P-201ENST00000410991 178 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
DDX28Q9NUL7 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.82□□□□□ -2.12
DDX28Q9NUL7 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.82□□□□□ -2.12
DDX28Q9NUL7 USP9YP28-201ENST00000435142 589 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 MTND1P34-201ENST00000438556 671 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.82□□□□□ -2.12
DDX28Q9NUL7 AC091435.1-201ENST00000505442 584 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 FAM206BP-201ENST00000510179 541 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 AC087441.2-201ENST00000529141 262 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 FGF7P1-201ENST00000582820 288 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 AC243960.4-201ENST00000600532 288 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 CTHRC1P1-201ENST00000605383 469 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
DDX28Q9NUL7 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
DDX28Q9NUL7 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.82□□□□□ -2.12
DDX28Q9NUL7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.123-201ENST00000363338 102 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RNU6-1286P-201ENST00000383871 107 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RNU6-1215P-201ENST00000384441 102 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RNU6-160P-201ENST00000384591 107 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RNU6-1093P-201ENST00000391194 107 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RNA5SP489-201ENST00000410986 109 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RPL23AP6-201ENST00000446637 472 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AC096745.1-201ENST00000509945 370 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AL133215.3-201ENST00000609801 448 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 RMST_3.1-201ENST00000611651 109 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AL773524.1-201ENST00000614065 229 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 U1.36-201ENST00000620684 176 ntBASIC1.81□□□□□ -2.12
DDX28Q9NUL7 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.81□□□□□ -2.12
DDX28Q9NUL7 Y_RNA.89-201ENST00000363031 102 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 RNU5B-2P-201ENST00000363036 113 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 RNU4-12P-201ENST00000365233 139 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 RNU6-877P-201ENST00000383868 107 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 MIR521-1-201ENST00000384902 87 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC123900.1-201ENST00000420390 96 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AL445685.2-201ENST00000422551 342 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC116337.1-201ENST00000509680 687 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 RNU5F-4P-201ENST00000516581 114 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AP005660.1-201ENST00000522972 293 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
DDX28Q9NUL7 AC090517.1-201ENST00000569307 266 ntBASIC1.8□□□□□ -2.12
DDX28Q9NUL7 CYP2C61P-201ENST00000604072 290 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms