Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AL390729.2-201ENST00000416137 156 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AC027124.2-201ENST00000428249 105 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AC005326.1-201ENST00000429197 123 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 SNORA40.9-201ENST00000515895 93 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.668-201ENST00000516233 93 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 MIR2276-201ENST00000516886 89 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 MIR3199-1-201ENST00000582434 88 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AC007179.3-201ENST00000604976 235 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AC069294.1-201ENST00000608397 350 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AC062037.2-201ENST00000610137 73 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.28□□□□□ -1.89
TRIM39Q9HCM9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 MIR208A-201ENST00000362287 71 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.188-201ENST00000363952 111 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 RNU6-806P-201ENST00000365147 105 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.396-201ENST00000383949 103 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 SNORD63-201ENST00000384262 68 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 MIR218-1-201ENST00000384999 110 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 MT-TG-201ENST00000387429 68 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 RN7SL807P-201ENST00000470923 297 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 TRBVB-201ENST00000477100 408 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AC110588.1-201ENST00000559699 137 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 MIR4300-201ENST00000581016 96 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AC105245.1-201ENST00000581934 244 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 MIR5006-201ENST00000583027 110 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 AC073657.2-201ENST00000605661 303 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 uc_338.1-201ENST00000612113 180 ntBASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.27□□□□□ -1.89
TRIM39Q9HCM9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.230-201ENST00000364348 109 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.376-201ENST00000365638 108 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 MIR549A-201ENST00000385268 96 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 RPL30P4-201ENST00000429309 333 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 AC004386.2-201ENST00000441858 148 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 snoU13.22-201ENST00000459428 104 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 AC091179.3-201ENST00000474761 144 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 AC006483.1-201ENST00000487308 313 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 RNU6-344P-201ENST00000516635 111 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 RNU6-570P-201ENST00000517051 105 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 RNU6-586P-201ENST00000517265 104 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 AC010620.2-201ENST00000600135 313 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 SNORD11B-201ENST00000607707 90 ntBASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
TRIM39Q9HCM9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.26-201ENST00000362539 101 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 MIR1289-1-201ENST00000408836 144 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC005002.2-201ENST00000438228 269 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 IFNA11P-201ENST00000446352 526 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC009237.7-201ENST00000447357 229 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 RN7SL283P-201ENST00000489055 303 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 CKS1BP2-201ENST00000497342 240 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 RNU6-408P-201ENST00000515910 100 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC233702.2-202ENST00000562547 291 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC136932.1-201ENST00000574771 208 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 MZT1P2-201ENST00000604387 248 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC096577.2-201ENST00000611455 153 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 MIR5739-201ENST00000619803 80 ntBASIC3.25□□□□□ -1.89
TRIM39Q9HCM9 AC093908.1-201ENST00000623125 8092 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AC092435.3-201ENST00000565538 3654 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 SNORA70.4-201ENST00000365509 134 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 SNORA18.2-201ENST00000383865 132 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RNU6-472P-201ENST00000384299 107 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RNU6-937P-201ENST00000384325 106 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.498-201ENST00000384460 102 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AL033519.2-201ENST00000403958 392 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 MIR1294-201ENST00000408503 142 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 Y_RNA.597-201ENST00000410463 100 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RNU6-121P-201ENST00000410525 99 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 RPL21P38-201ENST00000418090 167 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 CBX3P6-201ENST00000430257 527 ntBASIC3.24□□□□□ -1.89
TRIM39Q9HCM9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms