Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 SNORA25B-201ENST00000365507 128 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 AL139098.1-201ENST00000407291 389 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 STAG3L5P-204ENST00000443759 179 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 AC100830.2-201ENST00000581636 240 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 AP001981.2-201ENST00000603241 418 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 MTND5P31-201ENST00000419366 1374 ntBASIC-1.34□□□□□ -2.62
VPS13AQ96RL7 Y_RNA.436-201ENST00000384097 102 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 RPL21P38-201ENST00000418090 167 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 AC098831.1-201ENST00000440661 216 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 HNRNPDLP3-201ENST00000456745 380 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 SNORA18.4-201ENST00000516440 124 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 MTND4LP26-201ENST00000518144 282 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 CR383656.4-201ENST00000546909 122 ntBASIC-1.35□□□□□ -2.62
VPS13AQ96RL7 RNU4-66P-201ENST00000365199 138 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 RAC1P6-201ENST00000423911 575 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 RNA5SP259-201ENST00000365541 109 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 MIR573-201ENST00000384964 99 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 AC093850.1-201ENST00000454121 251 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 RNU6-953P-201ENST00000459154 107 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 SCARNA4-202ENST00000625402 129 ntBASIC-1.35□□□□□ -2.63
VPS13AQ96RL7 RNA5SP33-201ENST00000516687 98 ntBASIC-1.36□□□□□ -2.63
VPS13AQ96RL7 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC-1.36□□□□□ -2.63
VPS13AQ96RL7 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC-1.36□□□□□ -2.63
VPS13AQ96RL7 RNU4-23P-201ENST00000362839 140 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AC119751.3-201ENST00000399720 670 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 MTCO1P21-201ENST00000416634 589 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AC022364.2-201ENST00000457963 554 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 MTCO3P9-201ENST00000506989 781 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 PLD1-217ENST00000627725 174 ntTSL 5 BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 Y_RNA.582-201ENST00000391023 95 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 SNORA26-201ENST00000391286 122 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 RNA5SP95-201ENST00000410319 137 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 USP9YP11-201ENST00000427537 717 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 MTCO1P5-201ENST00000433573 344 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AC007969.2-201ENST00000441891 191 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AC005042.3-201ENST00000453230 174 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 FCF1P9-201ENST00000412546 282 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 MTND5P13-201ENST00000513046 1079 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AL121652.1-201ENST00000608851 448 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AL603758.1-201ENST00000618654 241 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 AC093875.1-201ENST00000623688 504 ntBASIC-1.37□□□□□ -2.63
VPS13AQ96RL7 MIR148A-201ENST00000362215 68 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 Y_RNA.13-201ENST00000362403 112 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 RNA5SP269-201ENST00000459032 137 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 AC131055.1-201ENST00000584626 316 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 AC125232.2-201ENST00000592457 143 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 AC027309.3-201ENST00000623419 351 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 AC079354.2-201ENST00000453523 154 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 AC004223.4-201ENST00000612426 332 ntBASIC-1.38□□□□□ -2.63
VPS13AQ96RL7 MTND4P5-201ENST00000435821 1374 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 RNA5SP94-201ENST00000516917 108 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 SNRPGP16-201ENST00000533275 226 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AL355816.1-201ENST00000607951 118 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AL138713.1-201ENST00000624026 2130 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 MIR548AO-201ENST00000579992 96 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AC092953.2-201ENST00000608000 699 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 MIR1262-201ENST00000408276 93 ntBASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC-1.39□□□□□ -2.63
VPS13AQ96RL7 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 AC079382.1-201ENST00000493346 557 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 Y_RNA.715-201ENST00000517082 110 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 MIR3139-201ENST00000579145 76 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 AL034555.1-201ENST00000604816 211 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 AC055764.2-201ENST00000610089 670 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 SNORD14D-201ENST00000384390 87 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 C8orf59P1-201ENST00000429930 303 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 MTND1P3-201ENST00000484956 952 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 AC004908.3-201ENST00000610248 625 ntBASIC-1.4□□□□□ -2.63
VPS13AQ96RL7 SMIM11P1-201ENST00000369586 178 ntBASIC-1.41□□□□□ -2.63
VPS13AQ96RL7 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC-1.41□□□□□ -2.63
VPS13AQ96RL7 AL390208.1-201ENST00000605885 644 ntBASIC-1.41□□□□□ -2.63
VPS13AQ96RL7 GHRLOS.1-201ENST00000610995 70 ntBASIC-1.41□□□□□ -2.63
VPS13AQ96RL7 AC078974.1-201ENST00000411597 223 ntBASIC-1.41□□□□□ -2.64
VPS13AQ96RL7 AL714022.1-201ENST00000439897 151 ntBASIC-1.41□□□□□ -2.64
VPS13AQ96RL7 AC116337.2-201ENST00000477662 156 ntBASIC-1.41□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms