Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC108210.2-201ENST00000503681 201 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC096745.1-201ENST00000509945 370 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 SNORA19.2-201ENST00000516013 114 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 AP005136.1-201ENST00000579765 429 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC010900.2-201ENST00000604508 210 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC064807.4-201ENST00000607201 407 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 AL121757.2-201ENST00000611223 313 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 SNORD31B-201ENST00000364977 69 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 VN1R36P-201ENST00000414936 291 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 NCOR1P3-201ENST00000420479 303 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 TIMM9P3-201ENST00000428659 274 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 MTND3P9-201ENST00000429526 346 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS35Q96QK1 AC016925.1-201ENST00000458303 298 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 snoU13.6-201ENST00000458785 104 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 RPS29P27-201ENST00000463711 170 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.61□□□□□ -2.15
VPS35Q96QK1 AC025465.4-201ENST00000513422 638 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS35Q96QK1 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS35Q96QK1 MIR5692C1-201ENST00000585309 91 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 RPL17P51-201ENST00000605218 238 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 AC092807.2-201ENST00000609367 243 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 AL158209.2-201ENST00000619266 216 ntBASIC1.61□□□□□ -2.15
VPS35Q96QK1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VPS35Q96QK1 RNU6-1329P-201ENST00000365664 107 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 RNU6-259P-201ENST00000383999 107 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 Y_RNA.481-201ENST00000384373 102 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 RNU6-1026P-201ENST00000384465 108 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 RNU2-66P-201ENST00000410650 161 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 RN7SKP101-201ENST00000411376 320 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 SNORD13-201ENST00000459299 104 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 U8.21-201ENST00000459536 136 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 RNU6-1208P-201ENST00000459588 107 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC010409.1-201ENST00000487382 476 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC097473.1-201ENST00000508142 408 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC008834.1-201ENST00000511612 175 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 SNORA31.17-201ENST00000516953 127 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 RNU6-835P-201ENST00000516974 104 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC016256.1-201ENST00000547971 354 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 SUB1P4-201ENST00000566062 339 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 MIR4524B-201ENST00000581569 115 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 AC245008.1-201ENST00000608123 476 ntBASIC1.6□□□□□ -2.15
VPS35Q96QK1 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
VPS35Q96QK1 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.6□□□□□ -2.15
VPS35Q96QK1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 Y_RNA.51-201ENST00000362725 102 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 RNU6-1085P-201ENST00000363576 107 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 RNU6-1317P-201ENST00000364582 104 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 SNORA67.5-201ENST00000391036 107 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 RNU6-1093P-201ENST00000391194 107 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 RNU6-648P-201ENST00000410190 107 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 MTCO3P46-201ENST00000425787 232 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 AL359672.1-201ENST00000442302 409 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 SRRM1P2-201ENST00000464531 1192 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 RPL9P9-202ENST00000466501 579 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 RPS23P5-201ENST00000495419 428 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 AC091885.1-201ENST00000506658 268 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 RNU6-970P-201ENST00000516312 107 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 SUMO2P18-201ENST00000518873 252 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 MIR3198-2-201ENST00000577868 80 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 MIR5094-201ENST00000578766 85 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 AC073534.2-201ENST00000620377 381 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 FER-210ENST00000628534 558 ntTSL 5 BASIC1.59□□□□□ -2.15
VPS35Q96QK1 OR5AK4P-201ENST00000635912 903 ntBASIC1.59□□□□□ -2.15
VPS35Q96QK1 MTND5P9-201ENST00000503854 1755 ntBASIC1.59□□□□□ -2.16
VPS35Q96QK1 AC006026.1-201ENST00000444025 1803 ntBASIC1.59□□□□□ -2.16
VPS35Q96QK1 WWP1P1-201ENST00000466609 2769 ntBASIC1.59□□□□□ -2.16
VPS35Q96QK1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.58□□□□□ -2.16
VPS35Q96QK1 RNU1-17P-201ENST00000363022 152 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 SNORA18.2-201ENST00000383865 132 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 RNU6-439P-201ENST00000384188 106 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 MIR514A2-201ENST00000385131 88 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 MIR514A3-201ENST00000385132 88 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 MTCO3P40-201ENST00000392516 676 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 ARL5AP1-201ENST00000418991 388 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 USP9YP14-201ENST00000430663 563 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 USP9YP28-201ENST00000435142 589 ntBASIC1.58□□□□□ -2.16
VPS35Q96QK1 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms