Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 AC078918.1-201ENST00000498515 228 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 RN7SKP289-201ENST00000517244 295 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AC244505.7-201ENST00000599675 272 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AC069200.1-201ENST00000609511 323 ntBASIC4.37□□□□□ -1.71
TRERF1Q96PN7 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
TRERF1Q96PN7 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 AC008555.8-201ENST00000623602 2168 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 MIR450A1-201ENST00000362262 91 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 MIR208A-201ENST00000362287 71 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.35-201ENST00000362601 101 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 RNU5F-3P-201ENST00000363767 117 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.229-201ENST00000364347 113 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 RNU6-1082P-201ENST00000364574 107 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 SNORA70.4-201ENST00000365509 134 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 AL512604.1-201ENST00000404812 257 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 MIR1302-4-201ENST00000408701 150 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 RN7SKP177-201ENST00000410567 355 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 HMGB3P8-201ENST00000449709 577 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 AC078817.1-201ENST00000492623 435 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 RPL31P61-201ENST00000496160 376 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 AC021231.3-201ENST00000558497 370 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 U6.95-201ENST00000636931 70 ntBASIC4.36□□□□□ -1.71
TRERF1Q96PN7 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
TRERF1Q96PN7 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRERF1Q96PN7 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRERF1Q96PN7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.35□□□□□ -1.71
TRERF1Q96PN7 RNU6-1164P-201ENST00000364428 107 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 SNORA7.2-201ENST00000364446 145 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 RNU1-100P-201ENST00000365255 165 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 MIR7-3-201ENST00000384898 110 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRERF1Q96PN7 AL031003.1-201ENST00000404229 172 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 RNY4P30-201ENST00000410216 95 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 AC244670.1-201ENST00000436879 112 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 RPS27P1-201ENST00000450552 247 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 AC007215.1-201ENST00000464893 276 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 RNU1-103P-201ENST00000516502 125 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 SNORA31.16-201ENST00000516773 139 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 SNORA31.23-201ENST00000517219 133 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 MIR4644-201ENST00000579929 84 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 RNU1-30P-201ENST00000606575 163 ntBASIC4.35□□□□□ -1.71
TRERF1Q96PN7 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRERF1Q96PN7 AL136164.4-201ENST00000625013 2135 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 RNU6-1336P-201ENST00000383886 109 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 Y_RNA.415-201ENST00000384012 112 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 MIR526A2-201ENST00000390198 65 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 SNORA75.5-201ENST00000391291 81 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 FTH1P15-201ENST00000406984 280 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 CRYBB2P1-203ENST00000415709 538 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 AC104619.4-201ENST00000510773 249 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 MIR3121-201ENST00000579680 77 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 MIR3944-201ENST00000581277 108 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 AC068647.2-201ENST00000637380 353 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 MIR3529-201ENST00000637713 78 ntBASIC4.34□□□□□ -1.71
TRERF1Q96PN7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRERF1Q96PN7 AL133383.2-201ENST00000622958 2336 ntBASIC4.34□□□□□ -1.72
TRERF1Q96PN7 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORA63.1-201ENST00000362493 131 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 RNU1-18P-201ENST00000363062 164 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORD115-30-201ENST00000364117 82 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORD46.1-201ENST00000364139 104 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORD73B-201ENST00000364394 72 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 RNA5SP51-201ENST00000364750 119 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORA26.3-201ENST00000391119 136 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 RN7SKP284-201ENST00000411002 343 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC078809.1-201ENST00000427601 140 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC017083.1-201ENST00000428093 483 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 HMGN2P31-201ENST00000432430 273 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 SNORA71B-202ENST00000439232 272 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 Y_RNA.651-201ENST00000459380 103 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AP000873.1-201ENST00000463987 400 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 RPS4XP13-201ENST00000483219 789 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC106707.2-201ENST00000484182 374 ntBASIC4.33□□□□□ -1.72
TRERF1Q96PN7 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.33□□□□□ -1.72
TRERF1Q96PN7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms