Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC079140.5-201ENST00000507882 310 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC116337.1-201ENST00000509680 687 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC005741.1-201ENST00000511094 432 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-1178P-201ENST00000516674 107 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC109479.2-201ENST00000517842 174 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 CENPUP1-201ENST00000526649 1202 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AL034555.1-201ENST00000604816 211 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC092807.2-201ENST00000609367 243 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.783-201ENST00000613546 102 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 FAM157A-202ENST00000615155 405 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AC022418.1-201ENST00000624118 445 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 AP000560.1-201ENST00000624150 1937 ntBASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.75□□□□□ -2.13
ZNF540Q8NDQ6 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.88-201ENST00000363029 99 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNA5SP493-201ENST00000364115 91 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-234P-201ENST00000365229 104 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 MIR583-201ENST00000384846 75 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-332P-201ENST00000391193 108 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AL606923.1-201ENST00000406616 190 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNA5SP100-201ENST00000410903 110 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNA5SP59-201ENST00000410922 110 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 MTATP6P23-201ENST00000440153 476 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 HMGN2P23-201ENST00000456759 269 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNU1-131P-201ENST00000458943 161 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-970P-201ENST00000516312 107 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-295P-201ENST00000516901 104 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RNA5SP490-201ENST00000517141 136 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AC023050.3-201ENST00000541142 333 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 MIR3122-201ENST00000577243 73 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AC024614.2-201ENST00000577584 372 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 RBM11P1-201ENST00000604951 799 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AC016925.2-201ENST00000605108 242 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AL353997.5-201ENST00000618886 171 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AC241585.2-209ENST00000638217 143 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 AC099654.14-201ENST00000638599 341 ntBASIC1.74□□□□□ -2.13
ZNF540Q8NDQ6 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-105P-201ENST00000363909 104 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.279-201ENST00000364763 95 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-877P-201ENST00000383868 107 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-393P-201ENST00000384475 107 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AL356776.1-201ENST00000406574 447 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AL513185.2-201ENST00000425543 193 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 ERLEC1P1-201ENST00000433806 578 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 PRPS1P1-201ENST00000445305 876 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 RNU7-167P-201ENST00000459160 62 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC025465.3-201ENST00000510570 311 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-377P-201ENST00000515965 102 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AF235103.2-201ENST00000525753 346 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 VN1R80P-201ENST00000597126 338 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC025754.2-201ENST00000606491 432 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC002044.1-201ENST00000606707 158 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 MIR8074-201ENST00000615081 81 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC103705.1-201ENST00000619013 241 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AL136221.1-201ENST00000621449 509 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 AC121333.1-201ENST00000567488 2709 ntBASIC1.73□□□□□ -2.13
ZNF540Q8NDQ6 MIR424-201ENST00000362227 98 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-1285P-201ENST00000363480 105 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 SNORA16.1-201ENST00000364597 132 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 RNU4-66P-201ENST00000365199 138 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-338P-201ENST00000383888 105 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 RNU6-142P-201ENST00000384019 107 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 MT-TL1-201ENST00000386347 75 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 RNU2-20P-201ENST00000410425 191 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 AC138393.2-201ENST00000414742 246 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 MTCO3P18-201ENST00000440206 761 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 PPP1R2P5-201ENST00000457256 603 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 AC083904.1-201ENST00000487828 231 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 Y_RNA.654-201ENST00000497848 106 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 SNORA20.3-201ENST00000516880 132 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 MTND4P7-201ENST00000523876 130 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 AC087441.2-201ENST00000529141 262 ntBASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.72□□□□□ -2.13
ZNF540Q8NDQ6 MIR3169-201ENST00000578032 83 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms