Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC009487.4-201ENST00000624969 3585 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.9□□□□□ -1.94
CLRN3Q8NCR9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CLRN3Q8NCR9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CLRN3Q8NCR9 RNU6-545P-201ENST00000362681 104 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 snoU2_19.2-201ENST00000363024 80 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP399-201ENST00000364003 117 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 SNORD56.5-201ENST00000364281 72 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 RNU6-290P-201ENST00000365212 101 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.483-201ENST00000384380 101 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 MT-TW-201ENST00000387382 68 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 MT-TG-201ENST00000387429 68 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 MIR937-201ENST00000401271 86 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 DNAJC19P7-201ENST00000428811 344 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 AC016925.1-201ENST00000458303 298 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP246-201ENST00000458909 119 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 ATP5EP1-201ENST00000510257 156 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 RNU6-56P-201ENST00000516986 93 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 AL109918.3-201ENST00000603072 338 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 MIR6820-201ENST00000611508 62 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 AC004467.1-201ENST00000615678 330 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 AC022149.2-201ENST00000621061 203 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 MIR1248-201ENST00000629190 106 ntBASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
CLRN3Q8NCR9 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AC068647.1-201ENST00000489539 2265 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP124-201ENST00000362739 110 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.331-201ENST00000365267 102 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 RNU6-213P-201ENST00000384051 104 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 RNU6-505P-201ENST00000384427 107 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 MIR215-201ENST00000384858 110 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 SNORA53-201ENST00000391141 249 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AL139281.1-201ENST00000422120 335 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 MTND4LP30-201ENST00000454092 297 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 RN7SL499P-201ENST00000481141 276 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AC037487.3-201ENST00000606668 112 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AC006001.4-201ENST00000622243 395 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 AC091932.3-201ENST00000624223 323 ntBASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CLRN3Q8NCR9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 MIR335-201ENST00000362173 94 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 RNU4-30P-201ENST00000410245 143 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 CYCSP19-201ENST00000411715 316 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC009238.1-201ENST00000442165 424 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC009237.6-201ENST00000446969 424 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 HMGN2P18-201ENST00000450680 270 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AL137159.1-201ENST00000452808 512 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 RN7SL75P-201ENST00000461926 281 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 RPL21P126-201ENST00000470049 478 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 MIR4284-201ENST00000578924 81 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 MIR3684-201ENST00000579779 74 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AL356218.2-201ENST00000605264 187 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC127459.3-201ENST00000624328 466 ntBASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CLRN3Q8NCR9 AC010615.1-201ENST00000594254 1764 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 Y_RNA.188-201ENST00000363952 111 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP505-201ENST00000364748 108 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 MIR585-201ENST00000384887 94 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 MIR548B-201ENST00000385247 97 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP317-201ENST00000410176 116 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNU2-54P-201ENST00000410299 190 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RN7SKP202-201ENST00000410439 330 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP311-201ENST00000411290 116 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 HSPE1P25-201ENST00000455484 251 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 SNORD127-201ENST00000458892 86 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNU6-1132P-201ENST00000459214 107 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RN7SL98P-201ENST00000462271 300 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP315-201ENST00000516340 116 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNU2-34P-201ENST00000516534 121 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNA5SP312-201ENST00000517068 116 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 RNU6-667P-201ENST00000517186 102 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 CYCSP29-201ENST00000533731 318 ntBASIC2.87□□□□□ -1.95
CLRN3Q8NCR9 AC023157.2-201ENST00000540596 141 ntBASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms