Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNU1-57P-201ENST00000384491 166 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
HOXA4Q00056 SNORD67-201ENST00000390833 111 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 RNA5SP354-201ENST00000391247 136 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA4Q00056 RNA5SP201-201ENST00000410316 124 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AL159169.1-201ENST00000421119 127 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA4Q00056 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA4Q00056 RN7SL442P-201ENST00000473804 320 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AL121594.1-201ENST00000475906 575 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AC006445.1-201ENST00000491925 405 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AC104027.1-201ENST00000521887 300 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXA4Q00056 AC079598.5-201ENST00000547460 117 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.68□□□□□ -1.98
HOXA4Q00056 AC055872.1-201ENST00000570978 278 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 MIR4423-201ENST00000580922 80 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 MIR3944-201ENST00000581277 108 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA4Q00056 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.68□□□□□ -1.98
HOXA4Q00056 AL512605.2-201ENST00000592972 256 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 AC018692.3-201ENST00000623929 123 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 MIR3651-201ENST00000630427 90 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.68□□□□□ -1.98
HOXA4Q00056 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA4Q00056 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
HOXA4Q00056 AC135776.4-201ENST00000624300 1904 ntBASIC2.68□□□□□ -1.98
HOXA4Q00056 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA4Q00056 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA4Q00056 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA4Q00056 AC000403.1-201ENST00000613696 3585 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 snoU2_19.1-201ENST00000362361 80 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 Y_RNA.54-201ENST00000362766 105 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 Y_RNA.277-201ENST00000364754 102 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 MIR548I3-201ENST00000408378 149 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 MIR548H3-201ENST00000408771 118 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 MIR548I1-201ENST00000408810 149 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 RNU5A-5P-201ENST00000411054 116 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXA4Q00056 MTND2P29-201ENST00000438595 412 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 RN7SL863P-201ENST00000462370 296 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 AC073901.1-201ENST00000462471 408 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 AC091179.3-201ENST00000474761 144 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 RPS23P5-201ENST00000495419 428 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 AC145146.1-201ENST00000496370 254 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 SEPT14P8-201ENST00000508026 178 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXA4Q00056 Y_RNA.683-201ENST00000516508 93 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 RNU7-110P-201ENST00000516891 62 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 MIR3200-201ENST00000580767 85 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 AL161756.2-201ENST00000604597 246 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 SNORD113-5-201ENST00000607261 78 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 uc_338.14-201ENST00000613162 166 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 AC002064.3-201ENST00000623448 346 ntBASIC2.67□□□□□ -1.98
HOXA4Q00056 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.67□□□□□ -1.98
HOXA4Q00056 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA4Q00056 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
HOXA4Q00056 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXA4Q00056 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXA4Q00056 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
HOXA4Q00056 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
HOXA4Q00056 RNU4-90P-201ENST00000362773 141 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 RNU6-655P-201ENST00000362858 107 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 RNU6-727P-201ENST00000363592 107 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC2.66□□□□□ -1.98
HOXA4Q00056 RNU2-14P-201ENST00000411053 191 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AC097463.2-201ENST00000421074 142 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AL139109.1-201ENST00000455491 297 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 SNORD59.2-201ENST00000516873 68 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 AK6P2-201ENST00000549020 471 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 MIR4643-201ENST00000577473 78 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXA4Q00056 AC110079.1-202ENST00000635213 138 ntBASIC2.66□□□□□ -1.98
HOXA4Q00056 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA4Q00056 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
HOXA4Q00056 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA4Q00056 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA4Q00056 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HOXA4Q00056 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.65□□□□□ -1.98
HOXA4Q00056 Y_RNA.65-201ENST00000362846 100 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 SNORD56.3-201ENST00000363507 71 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 RNU6-1210P-201ENST00000363775 107 ntBASIC2.65□□□□□ -1.99
HOXA4Q00056 RNU6-1175P-201ENST00000365200 107 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms