Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC010409.1-201ENST00000487382 476 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.05□□□□□ -2.24
FOXA1P55317 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC1.05□□□□□ -2.24
FOXA1P55317 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC1.05□□□□□ -2.24
FOXA1P55317 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.05□□□□□ -2.24
FOXA1P55317 HIF1AP1-201ENST00000553642 175 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.05□□□□□ -2.24
FOXA1P55317 MIR4528-201ENST00000577763 90 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.05□□□□□ -2.24
FOXA1P55317 AC016925.2-201ENST00000605108 242 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 AC073114.1-201ENST00000612027 490 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 AL450472.1-202ENST00000637286 180 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
FOXA1P55317 MTND4P14-201ENST00000435799 1354 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 MIR424-201ENST00000362227 98 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 RNU6-439P-201ENST00000384188 106 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 SNORA36A-201ENST00000384221 132 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 RNU6-378P-201ENST00000384324 107 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 RNU6-517P-201ENST00000384362 110 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 Y_RNA.504-201ENST00000384481 104 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.04□□□□□ -2.24
FOXA1P55317 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.04□□□□□ -2.24
FOXA1P55317 RNU1-131P-201ENST00000458943 161 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AC016632.1-201ENST00000503994 196 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 SNORA31.17-201ENST00000516953 127 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AC069113.1-201ENST00000517763 267 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.04□□□□□ -2.24
FOXA1P55317 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.04□□□□□ -2.24
FOXA1P55317 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.04□□□□□ -2.24
FOXA1P55317 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.04□□□□□ -2.24
FOXA1P55317 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.04□□□□□ -2.24
FOXA1P55317 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.04□□□□□ -2.24
FOXA1P55317 SUB1P4-201ENST00000566062 339 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.04□□□□□ -2.24
FOXA1P55317 MIR3941-201ENST00000582572 103 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AC005786.1-201ENST00000588553 154 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AP001836.1-201ENST00000604675 523 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 RNU6-85P-201ENST00000605989 107 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 SNORD114-21-201ENST00000606412 72 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 U2.17-201ENST00000611454 95 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 PCGEM1.1-201ENST00000613431 131 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 AC091895.1-201ENST00000624494 256 ntBASIC1.04□□□□□ -2.24
FOXA1P55317 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.04□□□□□ -2.24
FOXA1P55317 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
FOXA1P55317 Y_RNA.118-201ENST00000363300 101 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 U3.9-201ENST00000363823 204 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 Y_RNA.796-201ENST00000364268 102 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 Y_RNA.799-201ENST00000364992 102 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNU6-438P-201ENST00000365561 103 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNU6-338P-201ENST00000383888 105 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNU6-939P-201ENST00000384634 107 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 MIR518E-201ENST00000385252 88 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 SNORA12.2-201ENST00000391040 156 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA1P55317 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA1P55317 AC139712.2-201ENST00000424302 339 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA1P55317 RNU7-63P-201ENST00000459054 62 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNU7-180P-201ENST00000459240 63 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 BET1P1-201ENST00000482276 359 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 ARL2BPP4-201ENST00000506854 471 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 Y_RNA.695-201ENST00000516715 107 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNU6-1098P-201ENST00000516772 96 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 RNA5SP102-201ENST00000516865 106 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA1P55317 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.03□□□□□ -2.24
FOXA1P55317 Z98751.3-201ENST00000604447 521 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 AC087752.4-201ENST00000605911 462 ntBASIC1.03□□□□□ -2.24
FOXA1P55317 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.03□□□□□ -2.24
FOXA1P55317 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.03□□□□□ -2.25
FOXA1P55317 Y_RNA.67-201ENST00000362870 100 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 Y_RNA.224-201ENST00000364308 111 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 RNU6-996P-201ENST00000365438 107 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 SNORA32.2-201ENST00000384049 122 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 SNORD26-201ENST00000384147 75 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.02□□□□□ -2.25
FOXA1P55317 RPS29P28-201ENST00000446439 141 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC073415.1-201ENST00000449240 153 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.02□□□□□ -2.25
FOXA1P55317 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.02□□□□□ -2.25
FOXA1P55317 AC007547.1-201ENST00000462177 490 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC005908.1-201ENST00000468701 347 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.02□□□□□ -2.25
FOXA1P55317 AC008628.2-201ENST00000502605 298 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 HMGN1P13-201ENST00000505795 138 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC097473.1-201ENST00000508142 408 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.02□□□□□ -2.25
FOXA1P55317 EIF4A1P12-201ENST00000551910 141 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC090115.3-201ENST00000553218 849 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 MTND5P35-201ENST00000557537 1720 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC021231.3-201ENST00000558497 370 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 CYP4A27P-201ENST00000567218 190 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 MIR5094-201ENST00000578766 85 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AL391646.1-201ENST00000603860 190 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC121247.2-201ENST00000604776 136 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AP001485.1-201ENST00000604799 199 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AL158063.1-201ENST00000615349 536 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AP000770.2-201ENST00000623694 100 ntBASIC1.02□□□□□ -2.25
FOXA1P55317 AC005609.4-201ENST00000625071 447 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms