Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.56□□□□□ -2.16
MSH6P52701 AC002044.1-201ENST00000606707 158 ntBASIC1.56□□□□□ -2.16
MSH6P52701 Z69908.1-201ENST00000622603 247 ntBASIC1.56□□□□□ -2.16
MSH6P52701 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
MSH6P52701 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
MSH6P52701 SNORD115-3-201ENST00000363100 82 ntBASIC1.55□□□□□ -2.16
MSH6P52701 SNORD32B-201ENST00000364460 84 ntBASIC1.55□□□□□ -2.16
MSH6P52701 RNU6-142P-201ENST00000384019 107 ntBASIC1.55□□□□□ -2.16
MSH6P52701 RNU11-3P-201ENST00000391111 133 ntBASIC1.55□□□□□ -2.16
MSH6P52701 RNA5SP212-201ENST00000391223 107 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AL117339.3-201ENST00000418733 162 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AC010975.2-201ENST00000427781 588 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.55□□□□□ -2.16
MSH6P52701 AL357134.1-201ENST00000445848 426 ntBASIC1.55□□□□□ -2.16
MSH6P52701 RNU6-333P-201ENST00000459117 107 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AC093259.1-201ENST00000509755 300 ntBASIC1.55□□□□□ -2.16
MSH6P52701 RSL24D1P11-201ENST00000591045 491 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AC119751.7-201ENST00000600494 245 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AL356157.2-201ENST00000605122 111 ntBASIC1.55□□□□□ -2.16
MSH6P52701 AC008536.2-201ENST00000607284 349 ntBASIC1.55□□□□□ -2.16
MSH6P52701 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.55□□□□□ -2.16
MSH6P52701 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
MSH6P52701 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
MSH6P52701 RNU6-552P-201ENST00000362869 119 ntBASIC1.54□□□□□ -2.16
MSH6P52701 RNU6-743P-201ENST00000364151 106 ntBASIC1.54□□□□□ -2.16
MSH6P52701 SNORD32A-201ENST00000364805 84 ntBASIC1.54□□□□□ -2.16
MSH6P52701 RNU6-517P-201ENST00000384362 110 ntBASIC1.54□□□□□ -2.16
MSH6P52701 SNORA8-201ENST00000384574 139 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1.54□□□□□ -2.16
MSH6P52701 EBAG9P1-201ENST00000418955 543 ntBASIC1.54□□□□□ -2.16
MSH6P52701 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AC090960.1-201ENST00000421072 306 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AC244636.1-201ENST00000421152 228 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.54□□□□□ -2.16
MSH6P52701 AL590556.1-201ENST00000423231 483 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH6P52701 AC078809.1-201ENST00000427601 140 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH6P52701 RNU6-956P-201ENST00000458868 103 ntBASIC1.54□□□□□ -2.16
MSH6P52701 RNU7-167P-201ENST00000459160 62 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AL356057.1-201ENST00000533798 831 ntBASIC1.54□□□□□ -2.16
MSH6P52701 MIR3136-201ENST00000583498 78 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AL078605.1-201ENST00000603529 500 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AL020996.3-201ENST00000606617 222 ntBASIC1.54□□□□□ -2.16
MSH6P52701 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.54□□□□□ -2.16
MSH6P52701 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.54□□□□□ -2.16
MSH6P52701 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.54□□□□□ -2.16
MSH6P52701 MIR3974-201ENST00000637126 96 ntBASIC1.54□□□□□ -2.16
MSH6P52701 MTND4P14-201ENST00000435799 1354 ntBASIC1.54□□□□□ -2.16
MSH6P52701 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
MSH6P52701 RNU1-58P-201ENST00000362413 163 ntBASIC1.53□□□□□ -2.16
MSH6P52701 RNU6-266P-201ENST00000364225 107 ntBASIC1.53□□□□□ -2.16
MSH6P52701 RNU5A-6P-201ENST00000384136 116 ntBASIC1.53□□□□□ -2.16
MSH6P52701 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.53□□□□□ -2.16
MSH6P52701 HMGN1P33-201ENST00000432945 451 ntBASIC1.53□□□□□ -2.16
MSH6P52701 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.53□□□□□ -2.16
MSH6P52701 AC244670.1-201ENST00000436879 112 ntBASIC1.53□□□□□ -2.16
MSH6P52701 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.53□□□□□ -2.16
MSH6P52701 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH6P52701 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH6P52701 TRAV32-201ENST00000553993 340 ntBASIC1.53□□□□□ -2.16
MSH6P52701 CYP3A137P-201ENST00000562436 69 ntBASIC1.53□□□□□ -2.16
MSH6P52701 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.53□□□□□ -2.16
MSH6P52701 AL034555.1-201ENST00000604816 211 ntBASIC1.53□□□□□ -2.16
MSH6P52701 SNORD98-201ENST00000636377 67 ntBASIC1.53□□□□□ -2.16
MSH6P52701 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.17
MSH6P52701 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.52□□□□□ -2.17
MSH6P52701 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
MSH6P52701 Y_RNA.99-201ENST00000363138 105 ntBASIC1.52□□□□□ -2.17
MSH6P52701 Y_RNA.553-201ENST00000384670 102 ntBASIC1.52□□□□□ -2.17
MSH6P52701 BTF3L4P2-201ENST00000392798 346 ntBASIC1.52□□□□□ -2.17
MSH6P52701 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.52□□□□□ -2.17
MSH6P52701 MTCO2P19-201ENST00000427513 598 ntBASIC1.52□□□□□ -2.17
MSH6P52701 CETN4P-201ENST00000432407 469 ntBASIC1.52□□□□□ -2.17
MSH6P52701 SNAP23P1-201ENST00000433229 246 ntBASIC1.52□□□□□ -2.17
MSH6P52701 AL121601.2-201ENST00000438019 707 ntBASIC1.52□□□□□ -2.17
MSH6P52701 RNU7-180P-201ENST00000459240 63 ntBASIC1.52□□□□□ -2.17
MSH6P52701 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH6P52701 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
MSH6P52701 AC010493.1-201ENST00000513479 292 ntBASIC1.52□□□□□ -2.17
MSH6P52701 HIF1AP1-201ENST00000553642 175 ntBASIC1.52□□□□□ -2.17
MSH6P52701 AC103996.1-201ENST00000555468 102 ntBASIC1.52□□□□□ -2.17
MSH6P52701 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.52□□□□□ -2.17
MSH6P52701 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH6P52701 AL022345.1-201ENST00000607292 135 ntBASIC1.52□□□□□ -2.17
MSH6P52701 AC009509.4-201ENST00000619202 509 ntBASIC1.52□□□□□ -2.17
MSH6P52701 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
MSH6P52701 ELL2P3-201ENST00000457883 1602 ntBASIC1.51□□□□□ -2.17
MSH6P52701 Y_RNA.77-201ENST00000362962 107 ntBASIC1.51□□□□□ -2.17
MSH6P52701 RNU6-996P-201ENST00000365438 107 ntBASIC1.51□□□□□ -2.17
MSH6P52701 RNU6-827P-201ENST00000365553 106 ntBASIC1.51□□□□□ -2.17
MSH6P52701 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
MSH6P52701 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
MSH6P52701 RN7SKP61-201ENST00000410642 295 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.51□□□□□ -2.17
MSH6P52701 MTCYBP8-201ENST00000422855 651 ntBASIC1.51□□□□□ -2.17
MSH6P52701 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.51□□□□□ -2.17
MSH6P52701 RPL23AP95-201ENST00000426806 265 ntBASIC1.51□□□□□ -2.17
MSH6P52701 AL133396.1-201ENST00000432048 687 ntBASIC1.51□□□□□ -2.17
MSH6P52701 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms