Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNA5SP190-201ENST00000365222 118 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 RNU6-1032P-201ENST00000384100 107 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 RNU6-220P-201ENST00000390919 107 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AL627390.1-201ENST00000396055 340 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 MIR1294-201ENST00000408503 142 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 MICF-203ENST00000432679 129 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.48□□□□□ -2.01
HOXC9P31274 Y_RNA.635-201ENST00000459041 101 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.48□□□□□ -2.01
HOXC9P31274 AC090515.1-201ENST00000465295 476 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AL121594.1-201ENST00000475906 575 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 Y_RNA.676-201ENST00000516393 96 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 RNU6-1016P-201ENST00000516689 94 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AC109329.1-201ENST00000518744 317 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXC9P31274 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.48□□□□□ -2.01
HOXC9P31274 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXC9P31274 AC093249.1-201ENST00000567049 203 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 RPS3AP23-202ENST00000574601 686 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AL670379.2-201ENST00000604983 252 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AC016727.1-205ENST00000605437 569 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AL132765.2-201ENST00000610812 351 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AC025253.1-201ENST00000613623 543 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AL159153.1-201ENST00000619688 317 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AC099654.5-201ENST00000636479 350 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 AC112487.2-201ENST00000637950 304 ntBASIC2.48□□□□□ -2.01
HOXC9P31274 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXC9P31274 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
HOXC9P31274 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
HOXC9P31274 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXC9P31274 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXC9P31274 snoU2_19.1-201ENST00000362361 80 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 VTRNA1-1-201ENST00000363120 99 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 RNU6-457P-201ENST00000363999 107 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 Y_RNA.263-201ENST00000364659 114 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 Y_RNA.338-201ENST00000365320 114 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 Y_RNA.595-201ENST00000410403 105 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 AL590135.1-201ENST00000422215 156 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 AC019205.3-201ENST00000424573 156 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 RPL23AP95-201ENST00000426806 265 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXC9P31274 CR769767.1-201ENST00000436337 346 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 GPM6BP3-201ENST00000442797 145 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 AC016700.2-201ENST00000446011 156 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 FO393415.2-201ENST00000480085 343 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 AC015911.1-201ENST00000495111 156 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXC9P31274 RNU5F-2P-201ENST00000516066 82 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 SNORA31.16-201ENST00000516773 139 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 RNU6-250P-201ENST00000516958 103 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXC9P31274 AC109446.1-201ENST00000566172 220 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.47□□□□□ -2.01
HOXC9P31274 AC078795.3-201ENST00000602913 472 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 SNORD98-201ENST00000636377 67 ntBASIC2.47□□□□□ -2.01
HOXC9P31274 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXC9P31274 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC9P31274 RNU1-72P-201ENST00000362976 153 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 RNU6-1285P-201ENST00000363480 105 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 SNORA36A-201ENST00000384221 132 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 Y_RNA.474-201ENST00000384341 102 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 U6atac.2-201ENST00000408644 118 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 Y_RNA.594-201ENST00000410373 140 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 RNU6-370P-201ENST00000411008 104 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC9P31274 AIMP1P2-201ENST00000425294 312 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC9P31274 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC9P31274 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC9P31274 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC9P31274 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC9P31274 AC107393.1-201ENST00000512403 346 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 RNU6-559P-201ENST00000516151 98 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC9P31274 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 AC115990.1-201ENST00000526957 301 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC9P31274 IMMP1LP2-201ENST00000552954 492 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 AC002984.1-201ENST00000591692 448 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 AC113139.1-201ENST00000605049 239 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 AC018462.2-201ENST00000605375 395 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 MIR8081-201ENST00000611533 95 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 HMGB1P24-202ENST00000615653 685 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 ZNF271P-202ENST00000465539 1970 ntBASIC2.46□□□□□ -2.02
HOXC9P31274 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
HOXC9P31274 Y_RNA.482-201ENST00000384377 111 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 HMGN2P35-201ENST00000412164 270 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 snoU13.14-201ENST00000459372 104 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 RPL7P42-201ENST00000481005 679 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC9P31274 RPL30P1-201ENST00000488676 339 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 AC016632.1-201ENST00000503994 196 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC9P31274 AC026782.1-201ENST00000512952 449 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 Y_RNA.670-201ENST00000516255 105 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 RNU6-277P-201ENST00000516272 106 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 RNU6-1213P-201ENST00000517075 94 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 MRPS36P4-201ENST00000534436 298 ntBASIC2.45□□□□□ -2.02
HOXC9P31274 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms