Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
RFX1P22670 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RFX1P22670 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
RFX1P22670 Y_RNA.233-201ENST00000364407 101 ntBASIC4.24□□□□□ -1.73
RFX1P22670 RNA5SP72-201ENST00000364442 117 ntBASIC4.24□□□□□ -1.73
RFX1P22670 RNU6-211P-201ENST00000384047 107 ntBASIC4.24□□□□□ -1.73
RFX1P22670 MIR34B-201ENST00000385076 84 ntBASIC4.24□□□□□ -1.73
RFX1P22670 MIR199A2-201ENST00000385289 110 ntBASIC4.24□□□□□ -1.73
RFX1P22670 RNU6-493P-201ENST00000391321 108 ntBASIC4.24□□□□□ -1.73
RFX1P22670 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.24□□□□□ -1.73
RFX1P22670 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC4.24□□□□□ -1.73
RFX1P22670 AC074198.2-201ENST00000508153 258 ntBASIC4.24□□□□□ -1.73
RFX1P22670 RNU1-117P-201ENST00000517041 158 ntBASIC4.24□□□□□ -1.73
RFX1P22670 RNU6-789P-201ENST00000517105 102 ntBASIC4.24□□□□□ -1.73
RFX1P22670 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RFX1P22670 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.24□□□□□ -1.73
RFX1P22670 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.24□□□□□ -1.73
RFX1P22670 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC4.24□□□□□ -1.73
RFX1P22670 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RFX1P22670 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RFX1P22670 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.24□□□□□ -1.73
RFX1P22670 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RFX1P22670 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
RFX1P22670 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RFX1P22670 ANKRD36BP1-201ENST00000358576 1779 ntBASIC4.23□□□□□ -1.73
RFX1P22670 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
RFX1P22670 Y_RNA.243-201ENST00000364481 109 ntBASIC4.23□□□□□ -1.73
RFX1P22670 Y_RNA.262-201ENST00000364641 102 ntBASIC4.23□□□□□ -1.73
RFX1P22670 RNU6-923P-201ENST00000364753 107 ntBASIC4.23□□□□□ -1.73
RFX1P22670 Y_RNA.304-201ENST00000365011 112 ntBASIC4.23□□□□□ -1.73
RFX1P22670 MIR586-201ENST00000385035 97 ntBASIC4.23□□□□□ -1.73
RFX1P22670 SNORA12-201ENST00000391162 147 ntBASIC4.23□□□□□ -1.73
RFX1P22670 MIR1183-201ENST00000408856 89 ntBASIC4.23□□□□□ -1.73
RFX1P22670 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC4.23□□□□□ -1.73
RFX1P22670 TRAPPC2P7-201ENST00000509650 231 ntBASIC4.23□□□□□ -1.73
RFX1P22670 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.23□□□□□ -1.73
RFX1P22670 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC4.23□□□□□ -1.73
RFX1P22670 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.23□□□□□ -1.73
RFX1P22670 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.23□□□□□ -1.73
RFX1P22670 XIST_intron.1-201ENST00000619444 68 ntBASIC4.23□□□□□ -1.73
RFX1P22670 U6.106-201ENST00000636360 105 ntBASIC4.23□□□□□ -1.73
RFX1P22670 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
RFX1P22670 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
RFX1P22670 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.22□□□□□ -1.73
RFX1P22670 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
RFX1P22670 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
RFX1P22670 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 RNA5SP97-201ENST00000365006 84 ntBASIC4.22□□□□□ -1.73
RFX1P22670 Y_RNA.308-201ENST00000365043 101 ntBASIC4.22□□□□□ -1.73
RFX1P22670 MIR30B-201ENST00000384850 88 ntBASIC4.22□□□□□ -1.73
RFX1P22670 MIR634-201ENST00000385208 97 ntBASIC4.22□□□□□ -1.73
RFX1P22670 OOSP1P1-201ENST00000423265 274 ntBASIC4.22□□□□□ -1.73
RFX1P22670 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 KRTAP13-6P-201ENST00000508999 371 ntBASIC4.22□□□□□ -1.73
RFX1P22670 Y_RNA.662-201ENST00000516028 97 ntBASIC4.22□□□□□ -1.73
RFX1P22670 SCARNA17.1-201ENST00000516211 143 ntBASIC4.22□□□□□ -1.73
RFX1P22670 SCARNA17.2-201ENST00000516334 143 ntBASIC4.22□□□□□ -1.73
RFX1P22670 AC026403.1-201ENST00000518938 295 ntBASIC4.22□□□□□ -1.73
RFX1P22670 CYCSP30-201ENST00000546447 172 ntBASIC4.22□□□□□ -1.73
RFX1P22670 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.22□□□□□ -1.73
RFX1P22670 SCARNA17.4-201ENST00000614296 143 ntBASIC4.22□□□□□ -1.73
RFX1P22670 AL365265.1-201ENST00000621045 234 ntBASIC4.22□□□□□ -1.73
RFX1P22670 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.22□□□□□ -1.73
RFX1P22670 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.22□□□□□ -1.73
RFX1P22670 AC073346.2-201ENST00000624724 2058 ntBASIC4.22□□□□□ -1.73
RFX1P22670 AC010329.5-201ENST00000623497 2174 ntBASIC4.21□□□□□ -1.73
RFX1P22670 RNU6-1272P-201ENST00000362776 107 ntBASIC4.21□□□□□ -1.74
RFX1P22670 RNU6-324P-201ENST00000363957 106 ntBASIC4.21□□□□□ -1.74
RFX1P22670 Y_RNA.435-201ENST00000384095 112 ntBASIC4.21□□□□□ -1.74
RFX1P22670 SNORA9-201ENST00000384215 133 ntBASIC4.21□□□□□ -1.74
RFX1P22670 RNU1-89P-201ENST00000384592 164 ntBASIC4.21□□□□□ -1.74
RFX1P22670 RN7SKP51-201ENST00000410781 304 ntBASIC4.21□□□□□ -1.74
RFX1P22670 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4.21□□□□□ -1.74
RFX1P22670 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.21□□□□□ -1.74
RFX1P22670 RPS29P4-201ENST00000414733 161 ntBASIC4.21□□□□□ -1.74
RFX1P22670 SRIP1-201ENST00000489235 288 ntBASIC4.21□□□□□ -1.74
RFX1P22670 RN7SL323P-201ENST00000494712 295 ntBASIC4.21□□□□□ -1.74
RFX1P22670 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.21□□□□□ -1.74
RFX1P22670 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.21□□□□□ -1.74
RFX1P22670 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
RFX1P22670 RNA5SP179-201ENST00000517284 121 ntBASIC4.21□□□□□ -1.74
RFX1P22670 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.21□□□□□ -1.74
RFX1P22670 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.21□□□□□ -1.74
RFX1P22670 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.21□□□□□ -1.74
RFX1P22670 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC4.21□□□□□ -1.74
RFX1P22670 AC090877.1-201ENST00000561418 344 ntBASIC4.21□□□□□ -1.74
RFX1P22670 MIR3684-201ENST00000579779 74 ntBASIC4.21□□□□□ -1.74
RFX1P22670 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
RFX1P22670 RNA5SP322-201ENST00000363617 119 ntBASIC4.2□□□□□ -1.74
RFX1P22670 SNORD115-30-201ENST00000364117 82 ntBASIC4.2□□□□□ -1.74
RFX1P22670 Y_RNA.240-201ENST00000364469 95 ntBASIC4.2□□□□□ -1.74
RFX1P22670 SNORA73.2-201ENST00000364946 201 ntBASIC4.2□□□□□ -1.74
RFX1P22670 RPS29P26-201ENST00000477483 171 ntBASIC4.2□□□□□ -1.74
RFX1P22670 MRPS36P2-201ENST00000512569 299 ntBASIC4.2□□□□□ -1.74
RFX1P22670 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.2□□□□□ -1.74
RFX1P22670 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms