Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 MTND2P14-201ENST00000482139 351 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AL163195.1-201ENST00000496941 348 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-410P-201ENST00000517006 107 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 CBX3P8-201ENST00000532412 525 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AL442163.3-201ENST00000554110 156 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 CYP4A27P-201ENST00000567218 190 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AC090517.1-201ENST00000569307 266 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 MIR4742-201ENST00000581069 85 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AL391646.1-201ENST00000603860 190 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 MZT1P2-201ENST00000604387 248 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AC064872.1-201ENST00000604823 1072 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AC008945.2-201ENST00000606056 604 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 MIR8070-201ENST00000616510 88 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AC027335.2-201ENST00000624030 375 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 AC022418.1-201ENST00000624118 445 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 U6.114-201ENST00000636407 96 ntBASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-545P-201ENST00000362681 104 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 RNU4-56P-201ENST00000364700 142 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-418P-201ENST00000384035 107 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-1029P-201ENST00000384109 107 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 Y_RNA.504-201ENST00000384481 104 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 MIR1-2-201ENST00000384961 85 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 MIR454-201ENST00000390180 115 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 Y_RNA.598-201ENST00000410480 95 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC013410.2-201ENST00000422627 201 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AL596276.1-201ENST00000434465 418 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 MTND2P39-201ENST00000457230 764 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 LRRC34P2-201ENST00000514850 553 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 RNU2-69P-201ENST00000516061 100 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 RN7SKP265-201ENST00000516448 223 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 RNA5SP384-201ENST00000516615 116 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AP005136.1-201ENST00000579765 429 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC005014.3-201ENST00000605985 190 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC004223.4-201ENST00000612426 332 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 AC005520.5-201ENST00000613926 164 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.7□□□□□ -2.3
TRAV41A0A0B4J266 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 RNY4P34-201ENST00000364779 95 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 SNORA25.9-201ENST00000365087 128 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 SNORA25-201ENST00000384384 134 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 MIR1276-201ENST00000408707 83 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 RPS3AP3-201ENST00000411933 242 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 POLR2J4-204ENST00000418424 324 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 MTCO3P29-201ENST00000432119 779 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 USP9YP28-201ENST00000435142 589 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC009961.2-201ENST00000435771 251 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 PRPS1P1-201ENST00000445305 876 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC132479.1-201ENST00000449160 144 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 C1DP4-201ENST00000455429 424 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC016632.1-201ENST00000503994 196 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AK3P2-201ENST00000507976 429 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC011406.1-201ENST00000512440 370 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AP003072.2-201ENST00000527756 676 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AGGF1P4-201ENST00000568249 801 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC136932.1-201ENST00000574771 208 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 MIR4661-201ENST00000582720 75 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AC091805.2-201ENST00000603848 235 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AP001836.1-201ENST00000604675 523 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AL356157.2-201ENST00000605122 111 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 Z99289.3-201ENST00000605586 594 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 BX284668.6-201ENST00000606899 438 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 AL353149.1-201ENST00000610667 244 ntBASIC0.69□□□□□ -2.3
TRAV41A0A0B4J266 OR4G1P-203ENST00000641984 1631 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 MIR96-201ENST00000362288 78 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-266P-201ENST00000364225 107 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 RNU4-28P-201ENST00000364739 141 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-1026P-201ENST00000384465 108 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-393P-201ENST00000384475 107 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 RNU6-1127P-201ENST00000384580 107 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 SNORD70.1-201ENST00000391007 85 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 MIR208B-201ENST00000401172 77 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 MTND3P17-201ENST00000416968 344 ntBASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC0.68□□□□□ -2.3
TRAV41A0A0B4J266 RPL31P35-201ENST00000431058 377 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms