Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AP005660.1-201ENST00000522972 293 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 OR1M4P-201ENST00000589199 287 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC098657.3-201ENST00000620434 263 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 SNORA67.1-201ENST00000364749 141 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 SNORD32A-201ENST00000364805 84 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 RNU6-487P-201ENST00000365430 104 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 RNU6-1127P-201ENST00000384580 107 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 Y_RNA.554-201ENST00000384672 102 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 SNORA67.6-201ENST00000391093 99 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 EIF4E2P1-201ENST00000393781 255 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AL669831.1-202ENST00000428504 417 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AL591043.1-201ENST00000432461 424 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC244670.1-201ENST00000436879 112 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 FABP5P14-201ENST00000437273 393 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 GTF2IP13-201ENST00000438487 386 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 DAP3P1-201ENST00000441522 278 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC243964.1-201ENST00000441814 261 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AP001025.1-201ENST00000486139 332 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 RNA5SP61-201ENST00000516453 100 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 RNU6-506P-201ENST00000516553 94 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC109479.2-201ENST00000517842 174 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.31□□□□□ -2.2
SHANK1Q9Y566 MIR5692C1-201ENST00000585309 91 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 Z82243.1-201ENST00000609432 473 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AC008121.3-201ENST00000618726 433 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 PVT1_3.1-201ENST00000620853 95 ntBASIC1.31□□□□□ -2.2
SHANK1Q9Y566 AP000560.1-201ENST00000624150 1937 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU1-72P-201ENST00000362976 153 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 MTCO3P40-201ENST00000392516 676 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 HMGN1P33-201ENST00000432945 451 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC245102.2-201ENST00000448956 180 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RPL31P41-201ENST00000477967 372 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AF186996.7-201ENST00000492781 209 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC107401.1-201ENST00000503426 685 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU4-49P-201ENST00000516080 140 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU1-92P-201ENST00000517017 135 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 SNORA31.23-201ENST00000517219 133 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU1-104P-201ENST00000517280 175 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 EIF1P4-201ENST00000572664 335 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AL138963.2-201ENST00000605137 226 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RMST_3.1-201ENST00000611651 109 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC009233.1-201ENST00000616477 371 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AL354950.2-201ENST00000617939 290 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AL159153.1-201ENST00000619688 317 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RMST_7.1-201ENST00000621935 268 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 Z69720.2-201ENST00000624755 279 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 snoU2_19.1-201ENST00000362361 80 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 Y_RNA.167-201ENST00000363735 109 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU6-1286P-201ENST00000383871 107 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 RNU6-142P-201ENST00000384019 107 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 Y_RNA.619-201ENST00000410951 90 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 UBE2V1P10-201ENST00000414685 269 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 CYCSP48-201ENST00000417124 323 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 PSPHP1-201ENST00000450062 261 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 MTND3P16-201ENST00000452205 344 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AL353752.1-201ENST00000454946 260 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC005741.1-201ENST00000511094 432 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AP004607.1-201ENST00000524456 203 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 TRAV32-201ENST00000553993 340 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.3□□□□□ -2.2
SHANK1Q9Y566 MIR3941-201ENST00000582572 103 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 BNIP3P25-201ENST00000596023 559 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC073410.2-201ENST00000603240 332 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC136443.5-201ENST00000603741 370 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 AC092954.2-201ENST00000609103 430 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 MIR5739-201ENST00000619803 80 ntBASIC1.3□□□□□ -2.2
SHANK1Q9Y566 Y_RNA.157-201ENST00000363638 102 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 RNU6-105P-201ENST00000363909 104 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 RNU4-75P-201ENST00000364621 146 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.29□□□□□ -2.2
SHANK1Q9Y566 MTND1P34-201ENST00000438556 671 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.29□□□□□ -2.2
SHANK1Q9Y566 RPL30P12-201ENST00000474666 353 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 SNORA43.2-201ENST00000516652 128 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AC090616.3-201ENST00000582184 217 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AC123912.5-201ENST00000605470 343 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 RNU6-85P-201ENST00000605989 107 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AC122108.2-201ENST00000611946 526 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AC090517.2-201ENST00000614966 680 ntBASIC1.29□□□□□ -2.2
SHANK1Q9Y566 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.29□□□□□ -2.2
SHANK1Q9Y566 SNORD56.1-201ENST00000362913 68 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms