Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RNA5SP175-201ENST00000364275 119 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 RNA5SP496-201ENST00000391240 109 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AL512604.1-201ENST00000404812 257 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 HDGFP1-201ENST00000405943 252 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 RNU6-383P-201ENST00000410864 94 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 RPL23AP83-201ENST00000434984 473 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AL121890.1-201ENST00000435457 205 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 RPL35AP15-201ENST00000468042 339 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AC010598.1-201ENST00000510378 103 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 RNU6-561P-201ENST00000516222 102 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 RNU6-659P-201ENST00000516454 104 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 IFITM8P-201ENST00000522529 394 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AC127455.1-201ENST00000565496 145 ntBASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.47□□□□□ -1.69
LIMD1Q9UGP4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.46□□□□□ -1.69
LIMD1Q9UGP4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 SNORA27.1-201ENST00000362604 124 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RNU6-597P-201ENST00000365620 102 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 SNORA20B-201ENST00000384220 132 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 MIR767-201ENST00000390228 109 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RNU6-460P-201ENST00000391158 108 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 MIR921-201ENST00000401133 56 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 Z74021.1-201ENST00000423610 407 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RNU7-57P-201ENST00000459540 60 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RPS26P55-201ENST00000471178 356 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 AC006499.6-201ENST00000511169 607 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 SNORA31.1-201ENST00000515993 133 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 SNORA31.5-201ENST00000516190 133 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RNU2-56P-201ENST00000516826 190 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 POLR3GP1-201ENST00000594073 261 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RPL30P11-203ENST00000598995 310 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 AC005972.2-201ENST00000604690 348 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 snoZ196.1-201ENST00000625269 89 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 AC012442.3-202ENST00000636742 206 ntBASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.46□□□□□ -1.7
LIMD1Q9UGP4 AC009487.4-201ENST00000624969 3585 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 ZNF702P-202ENST00000434269 1966 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 Y_RNA.124-201ENST00000363339 93 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 MIR449B-201ENST00000384995 97 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 RNA5SP252-201ENST00000391131 119 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 MIR1294-201ENST00000408503 142 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AL133547.1-201ENST00000448546 220 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AC006445.1-201ENST00000491925 405 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 RPS27P26-201ENST00000494583 239 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AC026726.1-201ENST00000512859 601 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 RNA5SP112-201ENST00000515937 99 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AC090049.2-201ENST00000550377 109 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AC015912.2-201ENST00000571053 181 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 MIR5685-201ENST00000579080 79 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 MAPK10-286ENST00000641208 8747 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AP003122.5-201ENST00000527668 3766 ntBASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.45□□□□□ -1.7
LIMD1Q9UGP4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 SNORA63.1-201ENST00000362493 131 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AL139095.1-201ENST00000404326 391 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AL355796.1-201ENST00000406706 323 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 RNU6-588P-201ENST00000410281 105 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 RNU2-52P-201ENST00000410680 190 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AL500522.2-201ENST00000448562 343 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 YWHAEP4-201ENST00000505390 198 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AC090142.3-201ENST00000519012 385 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AC103810.1-201ENST00000579873 453 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AL773545.4-201ENST00000637262 310 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AL513478.4-201ENST00000641636 310 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 AC110774.1-201ENST00000623567 2018 ntBASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
LIMD1Q9UGP4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 RNU6-153P-201ENST00000364422 104 ntBASIC4.43□□□□□ -1.7
LIMD1Q9UGP4 RNA5SP146-201ENST00000410743 123 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms