Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AL034555.1-201ENST00000604816 211 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.57□□□□□ -2
USP44Q9H0E7 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP44Q9H0E7 FO624990.1-201ENST00000636373 85 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 SNORD98-201ENST00000636377 67 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
USP44Q9H0E7 AC009541.1-201ENST00000438279 2662 ntBASIC2.57□□□□□ -2
USP44Q9H0E7 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.57□□□□□ -2
USP44Q9H0E7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
USP44Q9H0E7 MIRLET7G-201ENST00000362280 84 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 SNORD114-1-201ENST00000362705 72 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 Y_RNA.142-201ENST00000363491 102 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 RNU6-867P-201ENST00000364956 107 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 RNU6-1072P-201ENST00000384703 107 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 RNU6-443P-201ENST00000384780 107 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 MIR548F5-201ENST00000408421 86 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 AC027124.2-201ENST00000428249 105 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 AL513124.1-201ENST00000450410 614 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 RPS29P27-201ENST00000463711 170 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 AC090515.1-201ENST00000465295 476 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 UBL5P3-201ENST00000475112 231 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 AC132942.1-201ENST00000486753 483 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 AC107222.1-201ENST00000510899 637 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 HSPE1P18-201ENST00000517602 280 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.56□□□□□ -2
USP44Q9H0E7 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.56□□□□□ -2
USP44Q9H0E7 MIR3923-201ENST00000579521 83 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 MIR5089-201ENST00000580047 84 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 FGF7P1-201ENST00000582820 288 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 AL008636.1-201ENST00000625038 1018 ntBASIC2.56□□□□□ -2
USP44Q9H0E7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
USP44Q9H0E7 AC092881.1-201ENST00000638218 2733 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AP006437.1-201ENST00000641440 3685 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.55□□□□□ -2
USP44Q9H0E7 U3.13-201ENST00000364804 214 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
USP44Q9H0E7 RNU6-784P-201ENST00000384330 106 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
USP44Q9H0E7 AL590135.1-201ENST00000422215 156 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AC019205.3-201ENST00000424573 156 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AL121890.1-201ENST00000435457 205 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.55□□□□□ -2
USP44Q9H0E7 AC016700.2-201ENST00000446011 156 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.55□□□□□ -2
USP44Q9H0E7 AC015911.1-201ENST00000495111 156 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 PTP4A1P4-201ENST00000512479 322 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.55□□□□□ -2
USP44Q9H0E7 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.55□□□□□ -2
USP44Q9H0E7 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.55□□□□□ -2
USP44Q9H0E7 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.55□□□□□ -2
USP44Q9H0E7 MIR4446-201ENST00000578505 67 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 RPL17P51-201ENST00000605218 238 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.55□□□□□ -2
USP44Q9H0E7 AL161423.1-201ENST00000613700 262 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 HMGB1P24-202ENST00000615653 685 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 AC137590.2-201ENST00000619709 240 ntBASIC2.55□□□□□ -2
USP44Q9H0E7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
USP44Q9H0E7 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.54□□□□□ -2
USP44Q9H0E7 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
USP44Q9H0E7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP44Q9H0E7 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
USP44Q9H0E7 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP44Q9H0E7 RNU6-593P-201ENST00000364716 112 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 RNA5SP160-201ENST00000364866 120 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 RNU6-596P-201ENST00000365395 98 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 RNU6-1009P-201ENST00000390996 107 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 RN7SKP158-201ENST00000410453 326 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 HMGB3P2-201ENST00000411913 584 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.54□□□□□ -2
USP44Q9H0E7 AC009238.1-201ENST00000442165 424 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 GPM6BP3-201ENST00000442797 145 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC009237.6-201ENST00000446969 424 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.54□□□□□ -2
USP44Q9H0E7 MTND4P17-201ENST00000470444 350 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC090096.1-201ENST00000489168 390 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 ACA59.1-201ENST00000515966 143 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC105029.1-201ENST00000520250 669 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.54□□□□□ -2
USP44Q9H0E7 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC243960.4-201ENST00000600532 288 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AL049779.4-201ENST00000604500 156 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 AC124303.1-201ENST00000605703 360 ntBASIC2.54□□□□□ -2
USP44Q9H0E7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP44Q9H0E7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP44Q9H0E7 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP44Q9H0E7 RNU5E-4P-201ENST00000364931 120 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 RNU6-306P-201ENST00000384617 107 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 MIR517A-201ENST00000385001 87 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 MTCYBP2-201ENST00000407745 171 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 AC074085.1-201ENST00000413598 418 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.53□□□□□ -2
USP44Q9H0E7 RPS3AP52-201ENST00000435639 297 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.53□□□□□ -2
USP44Q9H0E7 AC010095.1-201ENST00000443543 144 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 RNU1-104P-201ENST00000517280 175 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 CYP4A27P-201ENST00000567218 190 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 POLR3GP2-201ENST00000588366 668 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 SNRPGP19-201ENST00000603826 189 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 LARP7P1-201ENST00000605576 316 ntBASIC2.53□□□□□ -2
USP44Q9H0E7 AC019193.3-201ENST00000609144 554 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms