Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MTATP6P26-201ENST00000445926 662 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.53□□□□□ -2
CHMP4AQ9BY43 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 CCDC34P1-201ENST00000507441 517 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 MIR449C-201ENST00000516047 92 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 AP001330.5-201ENST00000607176 411 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 Y_RNA.783-201ENST00000613546 102 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CHMP4AQ9BY43 AC009541.1-201ENST00000438279 2662 ntBASIC2.53□□□□□ -2.01
CHMP4AQ9BY43 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AL139156.1-201ENST00000412785 841 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 MTCO1P44-201ENST00000441935 243 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AL357134.1-201ENST00000445848 426 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AL021397.1-201ENST00000451806 248 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 RNU7-14P-201ENST00000459331 62 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AC130509.1-201ENST00000464158 433 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 RNA5SP401-201ENST00000515920 127 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 RNVU1-2-201ENST00000516326 135 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 CENPUP1-201ENST00000526649 1202 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AC090517.1-201ENST00000569307 266 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 VN1R80P-201ENST00000597126 338 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 AC069114.2-201ENST00000604699 304 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 OR5AK4P-201ENST00000635912 903 ntBASIC2.52□□□□□ -2.01
CHMP4AQ9BY43 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 RNU6-562P-201ENST00000362731 107 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 MTCO3P46-201ENST00000425787 232 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 SRRM1P2-201ENST00000464531 1192 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 HMGN1P13-201ENST00000505795 138 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 RNU6-1038P-201ENST00000516516 104 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 RNU6-612P-201ENST00000516909 102 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 MIR5089-201ENST00000580047 84 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 AC104984.5-201ENST00000586878 94 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 AC048344.4-201ENST00000619744 527 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 AL450472.1-202ENST00000637286 180 ntBASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.51□□□□□ -2.01
CHMP4AQ9BY43 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 Y_RNA.132-201ENST00000363421 102 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 Y_RNA.559-201ENST00000384686 107 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 AC083798.1-201ENST00000472671 131 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 MIR4285-201ENST00000581001 85 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 MIR4422-201ENST00000581938 83 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 AC103591.3-201ENST00000608684 209 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.5□□□□□ -2.01
CHMP4AQ9BY43 SNORD114-6-201ENST00000364393 72 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 SNORA26.9-201ENST00000391322 122 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 RNA5SP338-201ENST00000410495 85 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 RNU2-41P-201ENST00000410991 178 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 HMGB1P18-201ENST00000438801 619 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 TPTE2P5-203ENST00000458118 728 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 Y_RNA.654-201ENST00000497848 106 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC107401.1-201ENST00000503426 685 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC104383.1-201ENST00000530297 370 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC137590.2-201ENST00000619709 240 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 AC068792.1-201ENST00000621354 417 ntBASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.49□□□□□ -2.01
CHMP4AQ9BY43 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNU6-1085P-201ENST00000363576 107 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNU6-414P-201ENST00000363705 104 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNU4-66P-201ENST00000365199 138 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 SNORA69-201ENST00000383895 132 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNU6-378P-201ENST00000384324 107 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 MIR583-201ENST00000384846 75 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 U8.13-201ENST00000390842 128 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 AC139712.2-201ENST00000424302 339 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 AC114982.1-201ENST00000469402 321 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNU6-1098P-201ENST00000516772 96 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 RNA5SP481-201ENST00000516814 122 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 AC009318.2-201ENST00000610917 651 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 DUXAP9-208ENST00000622815 614 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 SNORA43.4-201ENST00000629559 138 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 MTND4P23-201ENST00000447723 1363 ntBASIC2.48□□□□□ -2.01
CHMP4AQ9BY43 SNORD73A-201ENST00000386062 65 ntBASIC2.47□□□□□ -2.01
CHMP4AQ9BY43 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CHMP4AQ9BY43 MTCO3P40-201ENST00000392516 676 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms