Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 U8.2-201ENST00000363156 134 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 Y_RNA.123-201ENST00000363338 102 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 RNA5SP138-201ENST00000365098 114 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 RNU6-234P-201ENST00000365229 104 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 Y_RNA.414-201ENST00000384011 101 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 SNORA70B-201ENST00000384210 135 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 RNU6-378P-201ENST00000384324 107 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SSX3Q99909 MIR208B-201ENST00000401172 77 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AL357139.1-201ENST00000407792 426 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 RNA5SP425-201ENST00000410336 112 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 RNA5SP118-201ENST00000410385 109 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AC009161.1-201ENST00000417306 376 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 Z98742.3-201ENST00000418637 326 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AL645568.3-201ENST00000433683 316 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 USP9YP28-201ENST00000435142 589 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC1.89□□□□□ -2.11
SSX3Q99909 RNA5SP57-201ENST00000459463 123 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 MTCYBP18-201ENST00000501056 747 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AC008549.1-201ENST00000512900 643 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 RNU6-256P-201ENST00000516747 97 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AP005639.2-201ENST00000527592 928 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AC016256.1-201ENST00000547971 354 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 EIF4A1P12-201ENST00000551910 141 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 CPDP1-201ENST00000579660 283 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SSX3Q99909 MIR8076-201ENST00000611401 83 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AL160394.1-201ENST00000624765 724 ntBASIC1.89□□□□□ -2.11
SSX3Q99909 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.89□□□□□ -2.11
SSX3Q99909 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SSX3Q99909 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.88□□□□□ -2.11
SSX3Q99909 AC016717.2-201ENST00000609089 5141 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 Y_RNA.157-201ENST00000363638 102 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 SNORA8-201ENST00000384574 139 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SSX3Q99909 RNA5SP465-201ENST00000391195 109 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.88□□□□□ -2.11
SSX3Q99909 OOSP1P1-201ENST00000423265 274 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.88□□□□□ -2.11
SSX3Q99909 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.88□□□□□ -2.11
SSX3Q99909 AL353705.4-201ENST00000449661 238 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 RNU7-187P-201ENST00000458985 68 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.88□□□□□ -2.11
SSX3Q99909 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.88□□□□□ -2.11
SSX3Q99909 MIR3945-201ENST00000581853 98 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 AL138726.1-201ENST00000614873 333 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SSX3Q99909 AC100810.6-201ENST00000638068 285 ntBASIC1.88□□□□□ -2.11
SSX3Q99909 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
SSX3Q99909 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SSX3Q99909 Y_RNA.99-201ENST00000363138 105 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 RNU6-1164P-201ENST00000364428 107 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 SNORA29-201ENST00000384183 140 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 RNU6-790P-201ENST00000384479 105 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 RNU6-192P-201ENST00000391253 100 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 SNORA3.2-201ENST00000408221 125 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 RN7SKP284-201ENST00000411002 343 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 FCF1P9-201ENST00000412546 282 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.87□□□□□ -2.11
SSX3Q99909 AL356320.1-201ENST00000429616 163 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.87□□□□□ -2.11
SSX3Q99909 MTND2P29-201ENST00000438595 412 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.87□□□□□ -2.11
SSX3Q99909 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.87□□□□□ -2.11
SSX3Q99909 AC011352.1-201ENST00000512300 793 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 RNU2-44P-201ENST00000516795 194 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 RNA5SP490-201ENST00000517141 136 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 MIR3672-201ENST00000584290 82 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.87□□□□□ -2.11
SSX3Q99909 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.87□□□□□ -2.11
SSX3Q99909 MIR3976-201ENST00000606807 139 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC116312.1-201ENST00000606841 314 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AL133215.3-201ENST00000609801 448 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC005520.5-201ENST00000613926 164 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 MIR6873-201ENST00000622788 63 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC098679.4-201ENST00000624241 654 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC009033.1-201ENST00000624279 431 ntBASIC1.87□□□□□ -2.11
SSX3Q99909 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.87□□□□□ -2.11
SSX3Q99909 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
SSX3Q99909 RNU6-562P-201ENST00000362731 107 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 RNU6-968P-201ENST00000384076 107 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 RNU6-95P-201ENST00000384697 107 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
SSX3Q99909 RNU6-1093P-201ENST00000391194 107 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 MIR1277-201ENST00000408536 78 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 RNA5SP338-201ENST00000410495 85 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.86□□□□□ -2.11
SSX3Q99909 AL590632.1-201ENST00000424289 371 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 AL513185.2-201ENST00000425543 193 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.86□□□□□ -2.11
SSX3Q99909 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.86□□□□□ -2.11
SSX3Q99909 HMGN2P18-201ENST00000450680 270 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.86□□□□□ -2.11
SSX3Q99909 PCMTD1P1-201ENST00000455560 355 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.86□□□□□ -2.11
SSX3Q99909 snoU13.6-201ENST00000458785 104 ntBASIC1.86□□□□□ -2.11
SSX3Q99909 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms