Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AC012493.3-201ENST00000604494 112 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 AL356157.2-201ENST00000605122 111 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 uc_338.20-201ENST00000621563 178 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 AC098679.4-201ENST00000624241 654 ntBASIC1.59□□□□□ -2.16
SCN2AQ99250 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.59□□□□□ -2.16
SCN2AQ99250 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.58□□□□□ -2.16
SCN2AQ99250 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
SCN2AQ99250 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
SCN2AQ99250 RNU6-655P-201ENST00000362858 107 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 SNORA3A-201ENST00000364113 130 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 Y_RNA.338-201ENST00000365320 114 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 Y_RNA.372-201ENST00000365599 102 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 RNU6-128P-201ENST00000383976 107 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 MIR517A-201ENST00000385001 87 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 MIR518E-201ENST00000385252 88 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 MTCO3P46-201ENST00000425787 232 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.58□□□□□ -2.16
SCN2AQ99250 DAP3P1-201ENST00000441522 278 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AL359672.1-201ENST00000442302 409 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AL031274.1-201ENST00000450334 232 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 PPP1R2P5-201ENST00000457256 603 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 RPS29P25-201ENST00000481709 171 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.58□□□□□ -2.16
SCN2AQ99250 AC025465.4-201ENST00000513422 638 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 Y_RNA.704-201ENST00000516851 102 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 RNU2-19P-201ENST00000517288 84 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 RNU6-323P-201ENST00000521915 107 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC087441.2-201ENST00000529141 262 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC022616.8-201ENST00000533569 253 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.58□□□□□ -2.16
SCN2AQ99250 AC109446.1-201ENST00000566172 220 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC026271.5-201ENST00000577873 130 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.58□□□□□ -2.16
SCN2AQ99250 RPL30P11-203ENST00000598995 310 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC073410.2-201ENST00000603240 332 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC018889.1-201ENST00000605372 397 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.58□□□□□ -2.16
SCN2AQ99250 FAM157A-202ENST00000615155 405 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 AC090617.10-201ENST00000624308 134 ntBASIC1.58□□□□□ -2.16
SCN2AQ99250 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.58□□□□□ -2.16
SCN2AQ99250 CENPCP1-201ENST00000533085 2578 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 Y_RNA.3-201ENST00000362331 103 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 Y_RNA.89-201ENST00000363031 102 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RNU6-438P-201ENST00000365561 103 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RNU6-1286P-201ENST00000383871 107 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RNU6-38P-201ENST00000384085 107 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RNU6-483P-201ENST00000384088 108 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 SNORA46.1-201ENST00000391069 153 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AL627390.1-201ENST00000396055 340 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AP1B1P2-201ENST00000416196 106 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 MTND3P9-201ENST00000429526 346 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN2AQ99250 AC021146.2-201ENST00000504736 556 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RPL39P5-202ENST00000512505 151 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 MIR3618-201ENST00000580330 88 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.57□□□□□ -2.16
SCN2AQ99250 AC084782.3-201ENST00000612282 578 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AC005520.5-201ENST00000613926 164 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 DUXAP9-208ENST00000622815 614 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.57□□□□□ -2.16
SCN2AQ99250 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SCN2AQ99250 Y_RNA.40-201ENST00000362645 93 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RNU6-692P-201ENST00000384496 107 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SCN2AQ99250 SNORA40.19-201ENST00000390846 128 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AL590556.1-201ENST00000423231 483 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AL353689.1-201ENST00000438895 199 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 SNORD5.1-201ENST00000458800 75 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 RNA5SP233-201ENST00000459153 113 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 SRRM1P2-201ENST00000464531 1192 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AC104564.1-201ENST00000493028 407 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 HMGB1P35-201ENST00000503360 598 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SCN2AQ99250 RNU6-1332P-201ENST00000516666 104 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.57□□□□□ -2.16
SCN2AQ99250 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 TCL6_2.1-201ENST00000615162 119 ntBASIC1.57□□□□□ -2.16
SCN2AQ99250 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
SCN2AQ99250 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN2AQ99250 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.56□□□□□ -2.16
SCN2AQ99250 AP000560.1-201ENST00000624150 1937 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
SCN2AQ99250 U8.1-201ENST00000362843 134 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 RNU6-254P-201ENST00000363377 107 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 SNORA25.9-201ENST00000365087 128 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 RNA5SP190-201ENST00000365222 118 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 RNU6-843P-201ENST00000384454 104 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 RNU6-160P-201ENST00000384591 107 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN2AQ99250 RNA5SP201-201ENST00000410316 124 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 RNU6-325P-201ENST00000411132 105 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.56□□□□□ -2.16
SCN2AQ99250 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.56□□□□□ -2.16
SCN2AQ99250 AL606489.2-201ENST00000433886 234 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN2AQ99250 AC140059.1-201ENST00000489238 361 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.56□□□□□ -2.16
SCN2AQ99250 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.56□□□□□ -2.16
SCN2AQ99250 PTP4A1P4-201ENST00000512479 322 ntBASIC1.56□□□□□ -2.16
SCN2AQ99250 AC018630.3-201ENST00000542637 96 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms