Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 MIR448-201ENST00000362131 111 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNU6-1048P-201ENST00000364054 107 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNA5SP130-201ENST00000364431 114 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 Y_RNA.262-201ENST00000364641 102 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNA5SP479-201ENST00000364858 117 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNU6-546P-201ENST00000383991 107 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNU6-418P-201ENST00000384035 107 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RPS26P8-201ENST00000393490 348 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 SNORA3C-201ENST00000408792 125 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNU6-855P-201ENST00000410395 104 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNA5SP104-201ENST00000410989 118 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RNU6-57P-201ENST00000411348 103 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AL161788.1-201ENST00000441805 169 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 HMGN2P18-201ENST00000450680 270 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RN7SL271P-201ENST00000487601 295 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 RPL31P61-201ENST00000496160 376 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 HMGB3P3-201ENST00000510526 400 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AC027419.1-201ENST00000522976 328 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AC025884.1-201ENST00000556034 378 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AC007224.1-201ENST00000564410 144 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 SNORA51-201ENST00000606420 132 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 MIR6868-201ENST00000611215 58 ntBASIC3.12□□□□□ -1.91
CCDC140Q96MF4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC140Q96MF4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 Y_RNA.180-201ENST00000363867 113 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 RNU6-801P-201ENST00000364087 105 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 SNORA70C-201ENST00000384538 135 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 MIR1251-201ENST00000408552 70 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 MIR1289-1-201ENST00000408836 144 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 RN7SKP51-201ENST00000410781 304 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AL356095.1-201ENST00000417217 199 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AC104332.1-201ENST00000440471 797 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AC074290.1-201ENST00000448883 135 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AC114982.1-201ENST00000469402 321 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 AL034408.1-202ENST00000636088 415 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 MIR492-201ENST00000638676 116 ntBASIC3.11□□□□□ -1.91
CCDC140Q96MF4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
CCDC140Q96MF4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AC103988.1-201ENST00000566382 2177 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 RNA5SP399-201ENST00000364003 117 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 SNORD31B-201ENST00000364977 69 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 Y_RNA.341-201ENST00000365341 102 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 RNU6-710P-201ENST00000410424 105 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 ARF4P2-201ENST00000430209 526 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AL135790.2-201ENST00000437701 267 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 RPL23AP58-201ENST00000440453 469 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 RN7SL601P-201ENST00000471221 293 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AC074198.2-201ENST00000508153 258 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 PHBP14-201ENST00000512887 367 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 MIR2116-201ENST00000517221 80 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AC136628.3-201ENST00000521868 290 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AP005660.1-201ENST00000522972 293 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AL137100.2-201ENST00000555786 315 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 MIR3160-1-201ENST00000577972 85 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AC025754.2-201ENST00000606491 432 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 MIR6867-201ENST00000610636 67 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 AC013412.1-201ENST00000610687 192 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 snoZ196.1-201ENST00000625269 89 ntBASIC3.1□□□□□ -1.91
CCDC140Q96MF4 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC140Q96MF4 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.09□□□□□ -1.91
CCDC140Q96MF4 CEP170P1-201ENST00000502249 4587 ntBASIC3.09□□□□□ -1.91
CCDC140Q96MF4 RNU1-23P-201ENST00000363361 144 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms