Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-348P-201ENST00000384386 107 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 RNU6-1026P-201ENST00000384465 108 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 MIR208B-201ENST00000401172 77 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 RNU2-41P-201ENST00000410991 178 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 RNU7-14P-201ENST00000459331 62 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 snoU13.18-201ENST00000459483 104 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 ATP5EP1-201ENST00000510257 156 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 AC091874.1-201ENST00000511402 339 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 SUMO2P18-201ENST00000518873 252 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 MIR4285-201ENST00000581001 85 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 AC136475.10-201ENST00000620253 385 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 AC078883.4-201ENST00000623218 367 ntBASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
HDDC3Q8N4P3 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 MIR424-201ENST00000362227 98 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 RNU6-378P-201ENST00000384324 107 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 RNA5SP219-201ENST00000390940 113 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC068050.1-201ENST00000394891 380 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AL606923.1-201ENST00000406616 190 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC009474.2-201ENST00000451383 136 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC008628.2-201ENST00000502605 298 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC097473.1-201ENST00000508142 408 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 SNORA31.17-201ENST00000516953 127 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 CBX3P4-201ENST00000538909 354 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC090517.1-201ENST00000569307 266 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 MIR5094-201ENST00000578766 85 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC016925.2-201ENST00000605108 242 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AC008147.4-201ENST00000617570 1204 ntBASIC1.73□□□□□ -2.13
HDDC3Q8N4P3 AL391987.6-201ENST00000305671 199 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RNU4-42P-201ENST00000364738 142 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RNU6-439P-201ENST00000384188 106 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 Y_RNA.466-201ENST00000384294 113 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AP000275.1-201ENST00000411943 390 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RPL21P111-201ENST00000418453 477 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AC073415.1-201ENST00000449240 153 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RNU7-95P-201ENST00000459222 64 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RNU7-180P-201ENST00000459240 63 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RNU7-138P-201ENST00000459479 64 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AC010409.1-201ENST00000487382 476 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RNU6-1098P-201ENST00000516772 96 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 SUB1P4-201ENST00000566062 339 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 SNORD53B-201ENST00000577887 78 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AL354950.2-201ENST00000617939 290 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AL136221.1-201ENST00000621449 509 ntBASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.72□□□□□ -2.13
HDDC3Q8N4P3 Y_RNA.296-201ENST00000364930 108 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 SNORA36A-201ENST00000384221 132 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 SNORD37.1-201ENST00000390968 65 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL358453.1-201ENST00000422522 250 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL121601.2-201ENST00000438019 707 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 MTCO2P3-201ENST00000442543 421 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 TOMM22P6-201ENST00000465035 409 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 RPS3AP17-201ENST00000472594 777 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL163973.1-201ENST00000484753 577 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AC007834.2-201ENST00000536310 343 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 RPL17P51-201ENST00000605218 238 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AC068944.2-201ENST00000610373 403 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 MIR8074-201ENST00000615081 81 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 AC009541.1-201ENST00000438279 2662 ntBASIC1.71□□□□□ -2.14
HDDC3Q8N4P3 SNORD31B-201ENST00000364977 69 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 Y_RNA.327-201ENST00000365201 102 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC004965.1-201ENST00000413033 213 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 PPP1R2P5-201ENST00000457256 603 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 HMGN1P13-201ENST00000505795 138 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC025465.3-201ENST00000510570 311 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 RN7SKP298-201ENST00000515950 94 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC090115.3-201ENST00000553218 849 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 HMGB1P33-201ENST00000563485 527 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 MIR4255-201ENST00000579351 72 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 MIR3618-201ENST00000580330 88 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 AC064807.4-201ENST00000607201 407 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.7□□□□□ -2.14
HDDC3Q8N4P3 Z69908.1-201ENST00000622603 247 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms