Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-325P-201ENST00000411132 105 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 RPS20P15-201ENST00000412792 311 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 AL445685.2-201ENST00000422551 342 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 UBE2V1P4-201ENST00000425374 344 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.65□□□□□ -2.15
SKA3Q8IX90 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.65□□□□□ -2.15
SKA3Q8IX90 AMD1P1-201ENST00000457220 922 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 RNU7-66P-201ENST00000459469 62 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 AC092436.3-201ENST00000511788 257 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 PTP4A1P4-201ENST00000512479 322 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 AC025465.4-201ENST00000513422 638 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.65□□□□□ -2.15
SKA3Q8IX90 AC146944.4-201ENST00000602697 718 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 AC009318.2-201ENST00000610917 651 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 U4.5-201ENST00000617137 123 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SKA3Q8IX90 MIR450B-201ENST00000401182 78 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AL512604.1-201ENST00000404812 257 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 MTCYBP2-201ENST00000407745 171 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 SRIP3-201ENST00000413200 219 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC096920.1-201ENST00000423991 241 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 NDUFA5P4-201ENST00000436704 385 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AL513124.1-201ENST00000450410 614 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 RPS29P27-201ENST00000463711 170 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 RPL9P9-202ENST00000466501 579 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC104564.1-201ENST00000493028 407 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC021146.2-201ENST00000504736 556 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC110588.1-201ENST00000559699 137 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.64□□□□□ -2.15
SKA3Q8IX90 MIR3923-201ENST00000579521 83 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AP000654.2-201ENST00000605633 586 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC139792.2-201ENST00000624218 587 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 AC024614.3-201ENST00000637860 256 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SKA3Q8IX90 AP006437.1-201ENST00000641440 3685 ntBASIC1.64□□□□□ -2.15
SKA3Q8IX90 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SKA3Q8IX90 RNU6-254P-201ENST00000363377 107 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 RNY4P14-201ENST00000363656 96 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 SNORD113-7-201ENST00000363762 77 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 RNU6-933P-201ENST00000384424 107 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 MIR208B-201ENST00000401172 77 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 RNA5SP450-201ENST00000411206 102 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 MTCO1P21-201ENST00000416634 589 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 SNRPEP10-201ENST00000420249 274 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.63□□□□□ -2.15
SKA3Q8IX90 MTCO3P18-201ENST00000440206 761 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC003989.2-201ENST00000440224 169 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.63□□□□□ -2.15
SKA3Q8IX90 MTCO1P29-201ENST00000496868 288 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC114801.2-201ENST00000503825 781 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.63□□□□□ -2.15
SKA3Q8IX90 RNU6-567P-201ENST00000516746 107 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 MTND1P5-201ENST00000517906 940 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC026371.1-201ENST00000551867 419 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 CYP4A27P-201ENST00000567218 190 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC024614.2-201ENST00000577584 372 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC100830.2-201ENST00000581636 240 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC090617.10-201ENST00000624308 134 ntBASIC1.63□□□□□ -2.15
SKA3Q8IX90 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.63□□□□□ -2.15
SKA3Q8IX90 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SKA3Q8IX90 Y_RNA.89-201ENST00000363031 102 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 SNORA16.1-201ENST00000364597 132 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNU6-534P-201ENST00000364877 106 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNU6-877P-201ENST00000383868 107 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNU6-128P-201ENST00000383976 107 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNU6-378P-201ENST00000384324 107 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 Y_RNA.530-201ENST00000384587 101 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 MIR29C-201ENST00000385231 88 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNU6-332P-201ENST00000391193 108 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
SKA3Q8IX90 AL357139.1-201ENST00000407792 426 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 MIR548F1-201ENST00000408667 84 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 snoU13.6-201ENST00000458785 104 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 snoU13.15-201ENST00000459407 104 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC132942.1-201ENST00000486753 483 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 MTCYBP18-201ENST00000501056 747 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC093259.1-201ENST00000509755 300 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNA5SP182-201ENST00000516064 82 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 RNA5SP490-201ENST00000517141 136 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC109446.1-201ENST00000566172 220 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 DEFB122-202ENST00000569013 197 ntBASIC1.62□□□□□ -2.15
SKA3Q8IX90 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
SKA3Q8IX90 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 219.7 ms