Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AC097520.1-201ENST00000624435 385 ntBASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
CCDC40Q4G0X9 AC006026.1-201ENST00000444025 1803 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 MIR126-201ENST00000362291 85 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 SNORA12.2-201ENST00000391040 156 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AL663109.1-201ENST00000411498 844 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 TOMM22P6-201ENST00000465035 409 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AC021146.2-201ENST00000504736 556 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 RNA5SP401-201ENST00000515920 127 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 RNU6-612P-201ENST00000516909 102 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AC104383.1-201ENST00000530297 370 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 MTND1P15-201ENST00000579262 949 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AC005786.1-201ENST00000588553 154 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AC005520.5-201ENST00000613926 164 ntBASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.75□□□□□ -2.13
CCDC40Q4G0X9 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 RNU6-82P-201ENST00000363970 107 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 RNU6-438P-201ENST00000365561 103 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 Y_RNA.409-201ENST00000383990 98 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 SNORA32.2-201ENST00000384049 122 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 RNU6-38P-201ENST00000384085 107 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 MIR208B-201ENST00000401172 77 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC012306.1-201ENST00000423267 114 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC139712.2-201ENST00000424302 339 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 RNU6-1037P-201ENST00000459571 107 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC083798.1-201ENST00000472671 131 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC027575.1-201ENST00000481064 460 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 RNU5F-4P-201ENST00000516581 114 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 RNU6-1069P-201ENST00000516612 133 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC092747.3-201ENST00000603769 301 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC009994.1-201ENST00000606889 253 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC064836.2-201ENST00000609491 462 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CCDC40Q4G0X9 AC009541.1-201ENST00000438279 2662 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 WWP1P1-201ENST00000466609 2769 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 RNU4-20P-201ENST00000365601 151 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 Y_RNA.378-201ENST00000365652 113 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 MIR30A-201ENST00000385092 71 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AL358453.1-201ENST00000422522 250 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 RNU7-14P-201ENST00000459331 62 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AC096745.1-201ENST00000509945 370 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AC087854.1-201ENST00000519706 414 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 SUB1P4-201ENST00000566062 339 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AP005136.1-201ENST00000579765 429 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AC016925.2-201ENST00000605108 242 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AC064807.4-201ENST00000607201 407 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 AC233981.2-201ENST00000611524 1614 ntBASIC1.73□□□□□ -2.13
CCDC40Q4G0X9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RNU1-76P-201ENST00000362903 159 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 SNORD31B-201ENST00000364977 69 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RNU4-66P-201ENST00000365199 138 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 SNORA69-201ENST00000383895 132 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 HMGN2P23-201ENST00000456759 269 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RNU6-261P-201ENST00000459506 102 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RPS29P27-201ENST00000463711 170 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC010409.1-201ENST00000487382 476 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 FAM206BP-201ENST00000510179 541 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RNU6-323P-201ENST00000521915 107 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC104576.1-201ENST00000524225 88 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC025423.5-201ENST00000550230 219 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC090517.1-201ENST00000569307 266 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AC068792.1-201ENST00000621354 417 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 AL136221.1-201ENST00000621449 509 ntBASIC1.72□□□□□ -2.13
CCDC40Q4G0X9 MIR7843-201ENST00000622274 79 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms